Gene detail information of Glyur003111s00038647.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G04940.1 | 9.00E-95 | cysteine synthase D1 |
| NR | XP_003546824.1 | 2.91E-157 | PREDICTED: cysteine synthase-like isoform X1 [Glycine max] |
| COG | YP_591171.1 | 5.00E-97 | cysteine synthase [Candidatus Koribacter versatilis Ellin345] |
| Swissprot | tr|Q9S6Z7|CYSD1_ARATH | 3.00E-128 | Bifunctional L-3-cyanoalanine synthase/cysteine synthase D1 |
| trEMBL | tr|I1MJD2|I1MJD2_SOYBN | 1.00E-157 | Cysteine synthase {ECO:0000256|RuleBase:RU003985} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03111 | 19257 | 25445 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01738 | cysK | EC:2.5.1.47 | Carbon metabolism | map01200 |
| Biosynthesis of amino acids | map01230 | |||
| Sulfur metabolism | map00920 | |||
| Cysteine and methionine metabolism | map00270 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003111s00038647.1 | PF00291.20 | PALP | 12 | 135 | 1.20E-19 |
| Glyur003111s00038647.1 | PF00291.20 | PALP | 147 | 283 | 1.80E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.743 |
| SRR1783600 | control | 24.088 |
| SRR1783602 | moderate drought stress | 53.802 |
| SRR1811619 | moderate drought stress | 53.734 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.249 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.695 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 46.377 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 45.986 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.018 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.086 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 54.361 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 53.965 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.387 |
| SRR2868004 | Drought Stress(Tissue:root) | 14.412 |
| SRR2967015 | Control (Tissue:root) | 24.779 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 41.577 |
| SRR9715740 | Leave | 60.002 |
| SRR9715741 | Leave | 51.208 |
| SRR9715739 | Root | 4.619 |
| SRR9715742 | Root | 13.479 |
| SRR9715743 | Root | 10.849 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.621 |
| SRR8749028 | MeJA induced 9h | 1.715 |
| SRR8749029 | MeJA induced 9h | 1.750 |
| SRR8749030 | Uninduced | 1.466 |
| SRR8749031 | Uninduced | 1.023 |
| SRR8749032 | Uninduced | 1.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 27.820 |
| SRR8400027 | Control-Root | 33.343 |