Gene detail information of Glyur003119s00047084.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G17390.10S-adenosylmethionine synthetase family protein
NRXP_003546550.10PREDICTED: S-adenosylmethionine synthase-like isoform 1 [Glycine max]
COGYP_001179664.11.00E-154S-adenosylmethionine synthetase [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprottr|A4ULF8|METK_MEDSF0S-adenosylmethionine synthase
trEMBLtr|I1MHR0|I1MHR0_SOYBN0S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold031192019522377-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00789metK EC:2.5.1.6 Biosynthesis of amino acids map01230
Cysteine and methionine metabolismmap00270


Gene Ontology

biological_process

GO:0006556  S-adenosylmethionine biosynthetic process


molecular_function

GO:0004478  methionine adenosyltransferase activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003119s00047084.1PF00438.15S-AdoMet_synt_N511411.40E-35
Glyur003119s00047084.1PF02772.11S-AdoMet_synt_M1562781.80E-48
Glyur003119s00047084.1PF02773.11S-AdoMet_synt_C2804211.30E-68


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control387.638
SRR1783600control383.509
SRR1783602moderate drought stress175.893
SRR1811619moderate drought stress173.969

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain488.146
DRR006520Root Summer glycyrrhizin high producing strain482.899
DRR006521Root Winter glycyrrhizin high producing strain395.824
DRR006522Root Winter glycyrrhizin high producing strain386.822
DRR006523Root Summer glycyrrhizin low producing strain717.059
DRR006524Root Summer glycyrrhizin low producing strain718.852
DRR006525Leaf Summer glycyrrhizin high producing strain400.714
DRR006526Leaf Summer glycyrrhizin high producing strain400.262

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)699.810
SRR2868004Drought Stress(Tissue:root)657.870
SRR2967015Control (Tissue:root)528.454

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave925.844
SRR9715740Leave599.186
SRR9715741Leave1017.592
SRR9715739Root703.445
SRR9715742Root875.960
SRR9715743Root833.002

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1517.991
SRR8749028MeJA induced 9h1272.702
SRR8749029MeJA induced 9h1296.117
SRR8749030Uninduced1645.963
SRR8749031Uninduced1433.470
SRR8749032Uninduced1546.374

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root640.232
SRR8400027Control-Root679.743

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved