Gene detail information of Glyur003120s00035872.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G33070.10Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
NRAAO72533.10pyruvate decarboxylase 1 [Lotus corniculatus]
COGYP_007568556.13.00E-170Pyruvate decarboxylase [Legionella pneumophila subsp. pneumophila str. Philadelphia 1]
Swissprottr|O82647|PDC1_ARATH0Pyruvate decarboxylase 1
trEMBLtr|Q84V95|Q84V95_LOTCO0Pyruvate decarboxylase 1 {ECO:0000313|EMBL:AAO72533.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold031201353422701+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01568PDC, pdc EC:4.1.1.1 Glycolysis / Gluconeogenesis map00010


Gene Ontology

molecular_function

GO:0000287  magnesium ion binding

GO:0003824  catalytic activity

GO:0016831  carboxy-lyase activity

GO:0030976  thiamine pyrophosphate binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003120s00035872.1PF02776.13TPP_enzyme_N442121.10E-35
Glyur003120s00035872.1PF00205.17TPP_enzyme_M2413481.10E-17
Glyur003120s00035872.1PF02775.16TPP_enzyme_C4565129.60E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control240.923
SRR1783600control242.251
SRR1783602moderate drought stress103.435
SRR1811619moderate drought stress103.159

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain120.817
DRR006520Root Summer glycyrrhizin high producing strain120.160
DRR006521Root Winter glycyrrhizin high producing strain402.095
DRR006522Root Winter glycyrrhizin high producing strain394.207
DRR006523Root Summer glycyrrhizin low producing strain124.641
DRR006524Root Summer glycyrrhizin low producing strain124.388
DRR006525Leaf Summer glycyrrhizin high producing strain38.197
DRR006526Leaf Summer glycyrrhizin high producing strain38.047

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)80.910
SRR2868004Drought Stress(Tissue:root)64.014
SRR2967015Control (Tissue:root)55.001

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave49.470
SRR9715740Leave44.760
SRR9715741Leave42.475
SRR9715739Root200.210
SRR9715742Root254.147
SRR9715743Root237.125

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h354.191
SRR8749028MeJA induced 9h628.410
SRR8749029MeJA induced 9h833.433
SRR8749030Uninduced128.019
SRR8749031Uninduced381.260
SRR8749032Uninduced468.806

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root119.027
SRR8400027Control-Root157.990

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved