Gene detail information of Glyur003130s00042622.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G22980.10Ribosomal protein S5/Elongation factor G/III/V family protein
NRXP_004498119.10PREDICTED: elongation factor Tu GTP-binding domain-containing protein 1-like [Cicer arietinum]
COGNP_342235.15.00E-49elongation factor EF-2 [Sulfolobus solfataricus P2]
Swissprottr|O23755|EF2_BETVU2.00E-139Elongation factor 2
trEMBLtr|G7JKA7|G7JKA7_MEDTR0Elongation factor Tu family protein {ECO:0000313|EMBL:AES91827.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold031301292216002+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14536RIA1 EC:3.6.5.- Ribosome biogenesis in eukaryotes map03008


Gene Ontology

molecular_function

GO:0003924  GTPase activity

GO:0005525  GTP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003130s00042622.1PF00009.22GTP_EFTU122993.60E-49
Glyur003130s00042622.1PF03144.20GTP_EFTU_D24385185.10E-08
Glyur003130s00042622.1PF14492.1EFG_II5356021.80E-06
Glyur003130s00042622.1PF00679.19EFG_C8859698.00E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.950
SRR1783600control4.955
SRR1783602moderate drought stress6.201
SRR1811619moderate drought stress5.931

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.325
DRR006520Root Summer glycyrrhizin high producing strain10.332
DRR006521Root Winter glycyrrhizin high producing strain6.398
DRR006522Root Winter glycyrrhizin high producing strain6.166
DRR006523Root Summer glycyrrhizin low producing strain8.868
DRR006524Root Summer glycyrrhizin low producing strain8.856
DRR006525Leaf Summer glycyrrhizin high producing strain3.426
DRR006526Leaf Summer glycyrrhizin high producing strain3.384

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.847
SRR2868004Drought Stress(Tissue:root)15.588
SRR2967015Control (Tissue:root)15.372

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.457
SRR9715740Leave7.661
SRR9715741Leave7.424
SRR9715739Root9.470
SRR9715742Root14.669
SRR9715743Root15.125

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.875
SRR8749028MeJA induced 9h6.050
SRR8749029MeJA induced 9h3.228
SRR8749030Uninduced2.934
SRR8749031Uninduced2.538
SRR8749032Uninduced3.073

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root11.408
SRR8400027Control-Root11.363

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved