Gene detail information of Glyur003144s00042561.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G65030.15.00E-104Transducin/WD40 repeat-like superfamily protein
NRXP_004493242.10PREDICTED: p21-activated protein kinase-interacting protein 1-like [Cicer arietinum]
COGYP_001275252.14.00E-17WD-40 repeat-containing protein [Roseiflexus sp. RS-1]
trEMBLtr|G7IIU2|G7IIU2_MEDTR0p21-activated kinase-interacting-like protein {ECO:0000313|EMBL:AES65806.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0314419935316+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003144s00042561.1PF00400.27WD4033670.0055
Glyur003144s00042561.1PF00400.27WD401211520.0014
Glyur003144s00042561.1PF00400.27WD402482893.90E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control38.549
SRR1783600control39.264
SRR1783602moderate drought stress51.878
SRR1811619moderate drought stress52.112

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain24.959
DRR006520Root Summer glycyrrhizin high producing strain24.975
DRR006521Root Winter glycyrrhizin high producing strain29.179
DRR006522Root Winter glycyrrhizin high producing strain28.568
DRR006523Root Summer glycyrrhizin low producing strain33.082
DRR006524Root Summer glycyrrhizin low producing strain32.776
DRR006525Leaf Summer glycyrrhizin high producing strain17.041
DRR006526Leaf Summer glycyrrhizin high producing strain17.096

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)34.084
SRR2868004Drought Stress(Tissue:root)27.564
SRR2967015Control (Tissue:root)32.279

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave17.533
SRR9715740Leave18.255
SRR9715741Leave15.192
SRR9715739Root16.586
SRR9715742Root22.528
SRR9715743Root17.677

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h42.845
SRR8749028MeJA induced 9h29.982
SRR8749029MeJA induced 9h20.197
SRR8749030Uninduced8.483
SRR8749031Uninduced3.886
SRR8749032Uninduced7.363

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root29.026
SRR8400027Control-Root23.360

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved