Gene detail information of Glyur003152s00037491.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G24010.1 | 2.00E-116 | cellulose synthase like G1 |
| NR | XP_004499569.1 | 0 | PREDICTED: cellulose synthase-like protein G1-like [Cicer arietinum] |
| COG | YP_007129238.1 | 1.00E-19 | glycosyl transferase family 2 [Gloeocapsa sp. PCC 7428] |
| Swissprot | tr|Q570S7|CSLG1_ARATH | 8.00E-141 | Cellulose synthase-like protein G1 |
| trEMBL | tr|I1KFY7|I1KFY7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G48260.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03152 | 9493 | 24290 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003152s00037491.1 | PF03552.9 | Cellulose_synt | 92 | 364 | 7.50E-68 |
| Glyur003152s00037491.1 | PF03552.9 | Cellulose_synt | 375 | 693 | 1.40E-43 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 262.846 |
| SRR1783600 | control | 370.364 |
| SRR1783602 | moderate drought stress | 127.352 |
| SRR1811619 | moderate drought stress | 125.823 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 106.267 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 77.821 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.023 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.023 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.833 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.256 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.577 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.494 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 572.644 |
| SRR2868004 | Drought Stress(Tissue:root) | 254.452 |
| SRR2967015 | Control (Tissue:root) | 219.810 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.668 |
| SRR9715740 | Leave | 4.808 |
| SRR9715741 | Leave | 3.151 |
| SRR9715739 | Root | 143.696 |
| SRR9715742 | Root | 388.698 |
| SRR9715743 | Root | 341.510 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.052 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.076 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.008 |
| SRR8749032 | Uninduced | 0.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 380.887 |
| SRR8400027 | Control-Root | 367.044 |