Gene detail

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Gene detail information of Glyur003152s00037491.2

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G24010.1	2.00E-116	cellulose synthase like G1
NR	XP_004499569.1	0	PREDICTED: cellulose synthase-like protein G1-like [Cicer arietinum]
COG	YP_007129238.1	1.00E-19	glycosyl transferase family 2 [Gloeocapsa sp. PCC 7428]
Swissprot	tr\|Q570S7\|CSLG1_ARATH	8.00E-141	Cellulose synthase-like protein G1
trEMBL	tr\|I1KFY7\|I1KFY7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G48260.1}

Sequence

Transcript Sequence

>Glyur003152s00037491.2
GTTTAAAATTGGCATATATATATAAATATGTATGTATGTTTGGTTATTCCTAGTTCCTACTACTAATAATTAGCGATACATGAATTATACTTCCCACAACACAACTTAATTAGAGAAGTTAATTGGGTGTGTATAGAAAGAGAGAAAGAGAGAGAGAGAGAGAGATCATTGTGATGGCAAGCTTCACCCTTCACACAGAAACCGTTCAGTCATGGCTACTCCTCAGCAGACTTCACATACTGCTGCACCTCGCAGTTGTACTGCTCCTCTTATACTACCGCATCACACGTTTCCCCTTCCATGCTCCNACTCTACCGTGGACTCTGATGACCGTAGGTGAGGCTATTATGGCAGTGCTGTGGTTCTTCAACCAGGCCTTCCGGTGGCGGCCGGTGAGCCGCTCGGTGATGACGGAGAAGCTGCCCAGCGACGCGAAGCTGCCGGGGCTTGACATATTCGTGTGCACGCTTGACCCCGAGAAGGAGCCCACCGTGGAGCTCTCCGTTTACCTCTCCGACGATGGCGCCGCCCCGGTCACTCTTTACGGCGTGAGAGAGGCTTCTGAGTTCGCGAGGGTGTGGGTCCCTTTCTGCAAAAAGTATGGGATCAAGTCAAGGTGTCCCAAGGTTTTCTTCTCTCCCAGTGCTGAGGATGAACACCTTCTTCGCACCGACGAGTTCAGGTCAGAGCGAGACCTCATCAAGCTCAGAGTCTCAGGTCTAATCAGCAATGGGCCTTATGTACTTGTAGTGGACTGTGATATGTATTGCAATGACCCATCCTCAGCCAAACAAGCCATGTGTTTCTTTCTTGATCCTGAAACCTCTAAATGTATTGCATTTGTCCAATTCCCTCAAATGTTTCACAACCTTGGCAAAAAAGACATCTATGACAATCAATCTAGGACTGCTTTTAAGACAATGTGGCAAGGGATGGATGGACTAAGAGGTCCTGGTCTTTCTGGGCAGCGGATTCTCATATGGCATCTTACTGGAGAGTTCAATCACCTGGCTATCTTTTACACTGCAGAGGATGGAAATCAGCATATCTGTTACCCAAAGACACCATGTTTCTTAGGGTGTGCCCCAACTGACATCAAGGAAGGAATGCTCCAATTGGTGAAGTGGTTGTCTGAAATACTGCTTGCTCGGATTCTCTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold03152	9493	24290	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030244 cellulose biosynthetic process

cellular_component GO:0016020 membrane molecular_function GO:0016760 cellulose synthase (UDP-forming) activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003152s00037491.2	PF03552.9	Cellulose_synt	105	177	3.70E-14
Glyur003152s00037491.2	PF03552.9	Cellulose_synt	178	264	2.60E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	262.846
SRR1783600	control	370.364
SRR1783602	moderate drought stress	127.352
SRR1811619	moderate drought stress	125.823

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	106.267
DRR006520	Root Summer glycyrrhizin high producing strain	77.821
DRR006521	Root Winter glycyrrhizin high producing strain	0.023
DRR006522	Root Winter glycyrrhizin high producing strain	0.023
DRR006523	Root Summer glycyrrhizin low producing strain	5.833
DRR006524	Root Summer glycyrrhizin low producing strain	6.256
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.577
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.494

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	572.644
SRR2868004	Drought Stress(Tissue:root)	254.452
SRR2967015	Control (Tissue:root)	219.810

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	12.668
SRR9715740	Leave	4.808
SRR9715741	Leave	3.151
SRR9715739	Root	143.696
SRR9715742	Root	388.698
SRR9715743	Root	341.510

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.052
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.076
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.008
SRR8749032	Uninduced	0.356

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	380.887
SRR8400027	Control-Root	367.044