Gene detail information of Glyur003155s00038386.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G48500.1 | 1.00E-29 | jasmonate-zim-domain protein 4 |
| NR | XP_003534135.1 | 1.29E-175 | PREDICTED: protein TIFY 6B-like [Glycine max] |
| Swissprot | tr|Q9LVI4|TIF6B_ARATH | 6.00E-55 | Protein TIFY 6B |
| trEMBL | tr|I1L443|I1L443_SOYBN | 5.00E-176 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G30460.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03155 | 18846 | 25062 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Tify |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003155s00038386.1 | PF06200.9 | tify | 204 | 238 | 1.20E-18 |
| Glyur003155s00038386.1 | PF09425.5 | CCT_2 | 328 | 353 | 1.10E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.812 |
| SRR1783600 | control | 14.913 |
| SRR1783602 | moderate drought stress | 10.385 |
| SRR1811619 | moderate drought stress | 10.486 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.885 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.921 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.417 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.427 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.151 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.015 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 28.445 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 28.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.166 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.354 |
| SRR2967015 | Control (Tissue:root) | 15.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 19.979 |
| SRR9715740 | Leave | 20.773 |
| SRR9715741 | Leave | 19.121 |
| SRR9715739 | Root | 3.833 |
| SRR9715742 | Root | 12.860 |
| SRR9715743 | Root | 10.731 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.258 |
| SRR8749028 | MeJA induced 9h | 0.147 |
| SRR8749029 | MeJA induced 9h | 0.092 |
| SRR8749030 | Uninduced | 0.324 |
| SRR8749031 | Uninduced | 0.049 |
| SRR8749032 | Uninduced | 0.327 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.824 |
| SRR8400027 | Control-Root | 5.422 |