Gene detail information of Glyur003161s00042698.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G72200.1 | 2.00E-46 | RING/U-box superfamily protein |
| NR | XP_004501681.1 | 3.90E-175 | PREDICTED: RING-H2 finger protein ATL11-like [Cicer arietinum] |
| Swissprot | tr|Q84W40|ATL11_ARATH | 1.00E-71 | RING-H2 finger protein ATL11 (Precursor) |
| trEMBL | tr|G7J4G7|G7J4G7_MEDTR | 1.00E-155 | Uncharacterized protein {ECO:0000313|EMBL:AFK48506.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03161 | 11339 | 12535 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003161s00042698.1 | PF13639.1 | zf-RING_2 | 143 | 186 | 2.90E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.187 |
| SRR1783600 | control | 11.402 |
| SRR1783602 | moderate drought stress | 12.795 |
| SRR1811619 | moderate drought stress | 11.669 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.464 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.383 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.531 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.533 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.318 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.750 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.774 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.699 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 40.752 |
| SRR2868004 | Drought Stress(Tissue:root) | 46.804 |
| SRR2967015 | Control (Tissue:root) | 53.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 9.226 |
| SRR9715740 | Leave | 16.414 |
| SRR9715741 | Leave | 22.108 |
| SRR9715739 | Root | 22.391 |
| SRR9715742 | Root | 19.284 |
| SRR9715743 | Root | 18.137 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.826 |
| SRR8749028 | MeJA induced 9h | 28.938 |
| SRR8749029 | MeJA induced 9h | 15.265 |
| SRR8749030 | Uninduced | 15.288 |
| SRR8749031 | Uninduced | 7.324 |
| SRR8749032 | Uninduced | 12.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 23.072 |
| SRR8400027 | Control-Root | 23.770 |