Gene detail information of Glyur003181s00042648.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13420.11.00E-175Aldolase-type TIM barrel family protein
NRXP_003532330.10PREDICTED: uncharacterized protein LOC100807267 [Glycine max]
COGYP_919314.15.00E-125transaldolase [Nocardioides sp. JS614]
trEMBLtr|I1KZJ0|I1KZJ0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G47790.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold031811074915010-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00616E2.2.1.2, talA, talB EC:2.2.1.2 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Pentose phosphate pathwaymap00030


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0006098  pentose-phosphate shunt


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0003824  catalytic activity

GO:0004801  sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003181s00042648.1PF00923.14Transaldolase1134216.80E-72


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control518.313
SRR1783600control519.040
SRR1783602moderate drought stress304.605
SRR1811619moderate drought stress303.708

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain471.014
DRR006520Root Summer glycyrrhizin high producing strain466.030
DRR006521Root Winter glycyrrhizin high producing strain262.082
DRR006522Root Winter glycyrrhizin high producing strain252.742
DRR006523Root Summer glycyrrhizin low producing strain330.386
DRR006524Root Summer glycyrrhizin low producing strain329.518
DRR006525Leaf Summer glycyrrhizin high producing strain71.424
DRR006526Leaf Summer glycyrrhizin high producing strain71.185

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)409.967
SRR2868004Drought Stress(Tissue:root)346.786
SRR2967015Control (Tissue:root)339.037

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave66.321
SRR9715740Leave56.045
SRR9715741Leave68.280
SRR9715739Root397.120
SRR9715742Root362.803
SRR9715743Root374.162

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h237.081
SRR8749028MeJA induced 9h437.535
SRR8749029MeJA induced 9h188.446
SRR8749030Uninduced277.611
SRR8749031Uninduced219.888
SRR8749032Uninduced211.744

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root344.656
SRR8400027Control-Root272.761

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved