Gene detail information of Glyur003182s00045334.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48655.3 | 6.00E-15 | RING/U-box superfamily protein |
| NR | KHN05429.1 | 6.36E-60 | E3 ubiquitin-protein ligase RING2 [Glycine soja] |
| trEMBL | tr|C6T066|C6T066_SOYBN | 2.00E-60 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G03250.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03182 | 4612 | 8246 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003182s00045334.1 | PF15227.1 | zf-C3HC4_4 | 145 | 172 | 4.80E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.478 |
| SRR1783600 | control | 5.299 |
| SRR1783602 | moderate drought stress | 3.503 |
| SRR1811619 | moderate drought stress | 3.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.421 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.525 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.194 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.286 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.855 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.137 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.982 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.014 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.652 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.478 |
| SRR2967015 | Control (Tissue:root) | 8.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.167 |
| SRR9715740 | Leave | 10.121 |
| SRR9715741 | Leave | 6.803 |
| SRR9715739 | Root | 4.974 |
| SRR9715742 | Root | 6.787 |
| SRR9715743 | Root | 4.634 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.881 |
| SRR8749028 | MeJA induced 9h | 7.178 |
| SRR8749029 | MeJA induced 9h | 6.092 |
| SRR8749030 | Uninduced | 4.640 |
| SRR8749031 | Uninduced | 2.410 |
| SRR8749032 | Uninduced | 2.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.060 |
| SRR8400027 | Control-Root | 8.787 |