Gene detail information of Glyur003202s00043108.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT4G32180.1 | 2.00E-54 | pantothenate kinase 2 |
NR | KHN19302.1 | 2.37E-70 | Pantothenate kinase 2 [Glycine soja] |
Swissprot | tr|Q0J035|PANK2_ORYSJ | 2.00E-67 | Pantothenate kinase 2 |
trEMBL | tr|B9RB16|B9RB16_RICCO | 1.00E-68 | Pantothenate kinase, putative {ECO:0000313|EMBL:EEF51993.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold03202 | 13207 | 14587 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K09680 | coaW | EC:2.7.1.33 | Pantothenate and CoA biosynthesis | map00770 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur003202s00043108.1 | PF03630.9 | Fumble | 1 | 186 | 8.60E-46 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 0.488 |
SRR1783600 | control | 0.261 |
SRR1783602 | moderate drought stress | 0.271 |
SRR1811619 | moderate drought stress | 0.130 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 0.385 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 1.714 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 1.054 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 1.003 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 1.062 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 1.452 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.490 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.133 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 0.577 |
SRR2868004 | Drought Stress(Tissue:root) | 0.851 |
SRR2967015 | Control (Tissue:root) | 1.217 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 0.046 |
SRR9715740 | Leave | 0.486 |
SRR9715741 | Leave | 0.217 |
SRR9715739 | Root | 0.000 |
SRR9715742 | Root | 0.000 |
SRR9715743 | Root | 0.000 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 0.000 |
SRR8749028 | MeJA induced 9h | 0.217 |
SRR8749029 | MeJA induced 9h | 0.000 |
SRR8749030 | Uninduced | 0.000 |
SRR8749031 | Uninduced | 0.000 |
SRR8749032 | Uninduced | 0.000 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 0.241 |
SRR8400027 | Control-Root | 0.234 |