Gene detail information of Glyur003215s00039011.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G35920.10RNA helicase family protein
NRKHN48427.10Putative ATP-dependent RNA helicase DHX36 [Glycine soja]
COGYP_007469351.14.00E-44ATP-dependent helicase HrpA [Desulfocapsa sulfexigens DSM 10523]
Swissprottr|Q38953|DHX8_ARATH8.00E-45Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBLtr|I1L9L1|I1L9L1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G10180.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold032151493825433+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14442DHX36, RHAU EC:3.6.4.13 RNA degradation map03018


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding

GO:0008026  ATP-dependent helicase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003215s00039011.1PF00270.24DEAD2724271.50E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.263
SRR1783600control14.138
SRR1783602moderate drought stress24.315
SRR1811619moderate drought stress24.255

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.765
DRR006520Root Summer glycyrrhizin high producing strain21.675
DRR006521Root Winter glycyrrhizin high producing strain25.183
DRR006522Root Winter glycyrrhizin high producing strain25.013
DRR006523Root Summer glycyrrhizin low producing strain18.873
DRR006524Root Summer glycyrrhizin low producing strain19.200
DRR006525Leaf Summer glycyrrhizin high producing strain8.711
DRR006526Leaf Summer glycyrrhizin high producing strain8.749

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)29.585
SRR2868004Drought Stress(Tissue:root)33.554
SRR2967015Control (Tissue:root)37.673

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.006
SRR9715740Leave17.269
SRR9715741Leave19.662
SRR9715739Root12.306
SRR9715742Root35.134
SRR9715743Root30.447

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h33.380
SRR8749028MeJA induced 9h45.958
SRR8749029MeJA induced 9h22.331
SRR8749030Uninduced17.213
SRR8749031Uninduced8.661
SRR8749032Uninduced13.639

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root35.647
SRR8400027Control-Root32.185

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved