Gene detail information of Glyur003239s00035880.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G20950.20Glycosyl hydrolase family protein
NRXP_003601350.10Beta-D-glucosidase [Medicago truncatula]
COGYP_003265703.10glycoside hydrolase [Haliangium ochraceum DSM 14365]
Swissprottr|A5JTQ3|XYL2_MEDSV2.00E-37Alpha-L-arabinofuranosidase (Precursor)
trEMBLtr|G7J6L9|G7J6L9_MEDTR0Glycoside hydrolase family 3 protein {ECO:0000313|EMBL:AES71601.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold032391895623064-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH3


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05349bglX EC:3.2.1.21 Starch and sucrose metabolism map00500
Cyanoamino acid metabolismmap00460
Phenylpropanoid biosynthesismap00940


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0004553  hydrolase activity, hydrolyzing O-glycosyl compounds


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003239s00035880.1PF00933.16Glyco_hydro_3473791.50E-87
Glyur003239s00035880.1PF01915.17Glyco_hydro_3_C4166251.40E-43


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.882
SRR1783600control4.066
SRR1783602moderate drought stress0.650
SRR1811619moderate drought stress0.695

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.270
DRR006520Root Summer glycyrrhizin high producing strain6.293
DRR006521Root Winter glycyrrhizin high producing strain0.133
DRR006522Root Winter glycyrrhizin high producing strain0.114
DRR006523Root Summer glycyrrhizin low producing strain3.443
DRR006524Root Summer glycyrrhizin low producing strain3.554
DRR006525Leaf Summer glycyrrhizin high producing strain8.818
DRR006526Leaf Summer glycyrrhizin high producing strain8.572

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.329
SRR2868004Drought Stress(Tissue:root)3.390
SRR2967015Control (Tissue:root)3.180

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.733
SRR9715740Leave0.919
SRR9715741Leave2.078
SRR9715739Root0.243
SRR9715742Root4.550
SRR9715743Root4.154

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.450
SRR8749028MeJA induced 9h13.271
SRR8749029MeJA induced 9h10.507
SRR8749030Uninduced0.428
SRR8749031Uninduced0.255
SRR8749032Uninduced0.488

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root4.478
SRR8400027Control-Root3.318

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved