Gene detail information of Glyur003242s00036201.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G52440.1 | 9.00E-28 | Dof-type zinc finger DNA-binding family protein |
| NR | XP_006589880.1 | 7.12E-124 | PREDICTED: dof zinc finger protein DOF3.5-like [Glycine max] |
| Swissprot | tr|Q9SVC5|DOF35_ARATH | 3.00E-40 | Dof zinc finger protein DOF3.5 |
| trEMBL | tr|K7LI29|K7LI29_SOYBN | 8.00E-124 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G10142.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03242 | 1529 | 2506 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003242s00036201.1 | PF02701.10 | zf-Dof | 13 | 67 | 3.40E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.004 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.095 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.095 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.235 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.430 |
| SRR2967015 | Control (Tissue:root) | 0.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.030 |
| SRR8749028 | MeJA induced 9h | 12.553 |
| SRR8749029 | MeJA induced 9h | 10.665 |
| SRR8749030 | Uninduced | 1.882 |
| SRR8749031 | Uninduced | 0.952 |
| SRR8749032 | Uninduced | 0.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.034 |
| SRR8400027 | Control-Root | 0.024 |