Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur003249s00039256.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G53530.1	8.00E-52	Peptidase S24/S26A/S26B/S26C family protein
NR	XP_004488670.1	5.34E-85	PREDICTED: mitochondrial inner membrane protease subunit 1-like isoform X1 [Cicer arietinum]
COG	YP_076274.1	3.00E-13	signal peptidase I [Symbiobacterium thermophilum IAM 14863]
Swissprot	tr\|Q9M9Z2\|TPP2_ARATH	7.00E-08	Probable thylakoidal processing peptidase 2, chloroplastic (Precursor)
trEMBL	tr\|I1M2T2\|I1M2T2_SOYBN	5.00E-85	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G33660.1}

Sequence

Transcript Sequence

>Glyur003249s00039256.1
TCATCATTACAGTATCATCANCTTCGAAAAGAGGCACATAGTGACACACTGAGACAGAGAGTGAGAGAGATGAGGTTGATGAGTTACATTGCACGATGGAGAAGCGCAAATAAGGAAGCGTTGGATGGCACAGCGNTAGTAGTGAAGTTCCTATGCTGGCTTCACTTCGTCGACAACTACCTCTTCTCCCCAACTCACGTGAATGGGCCTAGCATGCTCCCAACCATTAATATCGCCGGCGACGTCATTCTCGCCGAGTTCCTCTCTCCGAGGCTCGGGAACCTCGGTCACGGCGACTTGGTTCTCGTTCGGTCCCCTTTGAACCCTAATCGGAGATTGACCAAACGCATCGTNGCCATGGAAGGGGACACCGTCACTTACTTTAACCCTTTAAACGCGGATGCTGCTCAAACTGCAGTGGTGCCAAAGGGGCATGTTTGGATTCAAGGGGATAACATCTATGCATCCCGGGATTCACGTCATTATGGTCCTGTTCCATACGGTCTTATACAAGGAAAATTGTTTTTCCGGGTAACTGTTGTGTTTTATGCCTACGAATGTCGATGGTGGAATAGAGTTAGTGAGCTGCCGCTAGGATGTGAGCCTGGTGGTAATGTGGCCTCACCTTACCGAGGCTTGGTAGTGCTTATGGCCAGTCATCCAGTAAAATGCATCAAATTATACTTGGATGGAGCTTCAGTGATTTCCATGAATGAGCATCTGAAGGAGCATGCTCCCTTTTAGCAAGGGGAATATTAGCATCTGAAGGAGCATGCTCCCTTTTAGCAAGGGGAATATTTCTTTTAGCAACATAGGATACATTTATTGGGGTCTATTTGAGTACTGTGTACAATTGGTTAGGAACCTTGCATTTTACTCGTTATTTTTTTCCCAAAAGAAATATATGCAGGGTAGGCTTATCTAACATGCTTCCCCATGTAAGAACACTGTAGACAATGCAGTTTTGCTGAAATAATAATCCTCTTGGTGGTGT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold03249	1268	5144	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K09647	IMP1	EC:3.4.21.-	Protein export	map03060

Gene Ontology

biological_process

GO:0006508 proteolysis

GO:0006627 protein processing involved in protein targeting to mitochondrion

cellular_component GO:0016020 membrane molecular_function GO:0008233 peptidase activity GO:0008236 serine-type peptidase activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003249s00039256.1	PF00717.18	Peptidase_S24	66	127	7.40E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.223
SRR1783600	control	7.956
SRR1783602	moderate drought stress	5.962
SRR1811619	moderate drought stress	6.161

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.589
DRR006520	Root Summer glycyrrhizin high producing strain	7.689
DRR006521	Root Winter glycyrrhizin high producing strain	7.002
DRR006522	Root Winter glycyrrhizin high producing strain	7.949
DRR006523	Root Summer glycyrrhizin low producing strain	6.409
DRR006524	Root Summer glycyrrhizin low producing strain	6.602
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.102
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.090

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	9.101
SRR2868004	Drought Stress(Tissue:root)	7.041
SRR2967015	Control (Tissue:root)	6.825

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.060
SRR9715740	Leave	4.912
SRR9715741	Leave	4.739
SRR9715739	Root	5.106
SRR9715742	Root	4.909
SRR9715743	Root	5.124

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.038
SRR8749028	MeJA induced 9h	3.484
SRR8749029	MeJA induced 9h	4.029
SRR8749030	Uninduced	1.485
SRR8749031	Uninduced	0.188
SRR8749032	Uninduced	0.851

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	9.025
SRR8400027	Control-Root	9.039