Gene detail information of Glyur003249s00039257.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G17050.11.00E-159solanesyl diphosphate synthase 2
NRXP_004488673.10PREDICTED: solanesyl diphosphate synthase 2, chloroplastic-like [Cicer arietinum]
COGYP_007054695.17.00E-129solanesyl diphosphate synthase [Rivularia sp. PCC 7116]
Swissprottr|Q76FS5|SPS2_ARATH0Solanesyl diphosphate synthase 2, chloroplastic (Precursor)
trEMBLtr|V7BTS8|V7BTS8_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW21359.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold03249787312157-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05356SPS, sds EC:2.5.1.84 2.5.1.85 Terpenoid backbone biosynthesis map00900


Gene Ontology

biological_process

GO:0008299  isoprenoid biosynthetic process

GO:0015979  photosynthesis


molecular_function

GO:0016765  transferase activity, transferring alkyl or aryl (other than methyl) groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003249s00039257.1PF00348.12polyprenyl_synt1313806.40E-68


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control1.653
SRR1783600control1.626
SRR1783602moderate drought stress1.494
SRR1811619moderate drought stress1.486

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.472
DRR006520Root Summer glycyrrhizin high producing strain3.443
DRR006521Root Winter glycyrrhizin high producing strain2.630
DRR006522Root Winter glycyrrhizin high producing strain2.423
DRR006523Root Summer glycyrrhizin low producing strain4.766
DRR006524Root Summer glycyrrhizin low producing strain4.776
DRR006525Leaf Summer glycyrrhizin high producing strain75.319
DRR006526Leaf Summer glycyrrhizin high producing strain74.623

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.450
SRR2868004Drought Stress(Tissue:root)8.712
SRR2967015Control (Tissue:root)9.218

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave119.106
SRR9715740Leave172.240
SRR9715741Leave102.443
SRR9715739Root1.804
SRR9715742Root3.022
SRR9715743Root3.474

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.067
SRR8749028MeJA induced 9h10.310
SRR8749029MeJA induced 9h4.744
SRR8749030Uninduced1.918
SRR8749031Uninduced0.075
SRR8749032Uninduced0.591

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.524
SRR8400027Control-Root6.521

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved