Gene detail information of Glyur003250s00041820.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G04120.17.00E-51glyceraldehyde-3-phosphate dehydrogenase C subunit 1
NRBAJ10476.14.68E-63glyceradehyde-3-phosphate dehydrogenase [Brassica rapa subsp. chinensis]
COGYP_006409680.14.00E-53glyceraldehyde-3-phosphate dehydrogenase, type I [Alistipes finegoldii DSM 17242]
Swissprottr|P17878|G3PC_MESCR2.00E-63Glyceraldehyde-3-phosphate dehydrogenase, cytosolic
trEMBLtr|D7UNZ6|D7UNZ6_BRARC2.00E-63Glyceradehyde-3-phosphate dehydrogenase {ECO:0000313|EMBL:BAJ10476.1} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0325050906183-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00134GAPDH, gapA EC:1.2.1.12 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Glycolysis / Gluconeogenesismap00010
Carbon fixation in photosynthetic organismsmap00710
HIF-1 signaling pathwaymap04066
Alzheimer's diseasemap05010


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016620  oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003250s00041820.1PF02800.15Gp_dh_C191293.20E-40


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.285
SRR1783600control6.460
SRR1783602moderate drought stress6.890
SRR1811619moderate drought stress7.010

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.193
DRR006520Root Summer glycyrrhizin high producing strain2.500
DRR006521Root Winter glycyrrhizin high producing strain1.465
DRR006522Root Winter glycyrrhizin high producing strain0.995
DRR006523Root Summer glycyrrhizin low producing strain2.603
DRR006524Root Summer glycyrrhizin low producing strain1.898
DRR006525Leaf Summer glycyrrhizin high producing strain1.012
DRR006526Leaf Summer glycyrrhizin high producing strain1.551

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.216
SRR2868004Drought Stress(Tissue:root)0.207
SRR2967015Control (Tissue:root)0.164

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.462
SRR9715740Leave0.108
SRR9715741Leave0.452
SRR9715739Root0.088
SRR9715742Root0.206
SRR9715743Root0.243

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.022
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.018
SRR8749030Uninduced0.000
SRR8749031Uninduced0.000
SRR8749032Uninduced0.009

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.053
SRR8400027Control-Root0.096

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved