Gene detail information of Glyur003251s00036739.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G03770.12.00E-149KDO transferase A
NRXP_004497594.10PREDICTED: probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial-like [Cicer arietinum]
COGYP_008976453.12.00E-663-deoxy-D-manno-octulosonic-acid transferase [Phaeobacter gallaeciensis DSM 26640]
Swissprottr|Q8VZA5|KDTA_ARATH0Probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial (Precursor)
trEMBLtr|G7I9B4|G7I9B4_MEDTR03-deoxy-D-manno-octulosonic-acid transferase {ECO:0000313|EMBL:AES60640.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0325148929957-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT30


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02527kdtA, waaA EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15 Lipopolysaccharide biosynthesis map00540


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003251s00036739.2PF04413.11Glycos_transf_N402223.60E-49


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.246
SRR1783600control7.299
SRR1783602moderate drought stress7.309
SRR1811619moderate drought stress7.695

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.949
DRR006520Root Summer glycyrrhizin high producing strain2.897
DRR006521Root Winter glycyrrhizin high producing strain5.111
DRR006522Root Winter glycyrrhizin high producing strain5.565
DRR006523Root Summer glycyrrhizin low producing strain4.311
DRR006524Root Summer glycyrrhizin low producing strain4.942
DRR006525Leaf Summer glycyrrhizin high producing strain3.066
DRR006526Leaf Summer glycyrrhizin high producing strain2.981

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)5.821
SRR2868004Drought Stress(Tissue:root)6.616
SRR2967015Control (Tissue:root)5.319

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.360
SRR9715740Leave3.704
SRR9715741Leave3.047
SRR9715739Root2.465
SRR9715742Root2.483
SRR9715743Root2.400

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.100
SRR8749028MeJA induced 9h7.561
SRR8749029MeJA induced 9h5.907
SRR8749030Uninduced8.886
SRR8749031Uninduced6.875
SRR8749032Uninduced5.706

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.862
SRR8400027Control-Root9.223

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved