Gene detail information of Glyur003251s00036739.3 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G03770.1 | 2.00E-149 | KDO transferase A |
| NR | XP_004497594.1 | 0 | PREDICTED: probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial-like [Cicer arietinum] |
| COG | YP_008976453.1 | 2.00E-66 | 3-deoxy-D-manno-octulosonic-acid transferase [Phaeobacter gallaeciensis DSM 26640] |
| Swissprot | tr|Q8VZA5|KDTA_ARATH | 0 | Probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial (Precursor) |
| trEMBL | tr|G7I9B4|G7I9B4_MEDTR | 0 | 3-deoxy-D-manno-octulosonic-acid transferase {ECO:0000313|EMBL:AES60640.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03251 | 4892 | 9957 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K02527 | kdtA, waaA | EC:2.4.99.12 2.4.99.13 2.4.99.14 2.4.99.15 | Lipopolysaccharide biosynthesis | map00540 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.246 |
| SRR1783600 | control | 7.299 |
| SRR1783602 | moderate drought stress | 7.309 |
| SRR1811619 | moderate drought stress | 7.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.949 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.897 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.111 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.565 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.311 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.942 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.066 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.981 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.821 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.616 |
| SRR2967015 | Control (Tissue:root) | 5.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.360 |
| SRR9715740 | Leave | 3.704 |
| SRR9715741 | Leave | 3.047 |
| SRR9715739 | Root | 2.465 |
| SRR9715742 | Root | 2.483 |
| SRR9715743 | Root | 2.400 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.100 |
| SRR8749028 | MeJA induced 9h | 7.561 |
| SRR8749029 | MeJA induced 9h | 5.907 |
| SRR8749030 | Uninduced | 8.886 |
| SRR8749031 | Uninduced | 6.875 |
| SRR8749032 | Uninduced | 5.706 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.862 |
| SRR8400027 | Control-Root | 9.223 |