Gene detail information of Glyur003252s00036292.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G15490.10UDP-glucose 6-dehydrogenase family protein
NRXP_003554799.10PREDICTED: UDP-glucose 6-dehydrogenase 1-like [Glycine max]
COGYP_003548756.10nucleotide sugar dehydrogenase [Coraliomargarita akajimensis DSM 45221]
Swissprottr|Q96558|UGDH1_SOYBN0UDP-glucose 6-dehydrogenase 1
trEMBLtr|I1N6A6|I1N6A6_SOYBN0UDP-glucose 6-dehydrogenase {ECO:0000256|PIRNR:PIRNR000124}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold032522370325145-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00012UGDH, ugd EC:1.1.1.22 Pentose and glucuronate interconversions map00040
Ascorbate and aldarate metabolismmap00053
Amino sugar and nucleotide sugar metabolismmap00520


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003979  UDP-glucose 6-dehydrogenase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287  NAD binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003252s00036292.1PF03721.9UDPG_MGDP_dh_N31857.90E-65
Glyur003252s00036292.1PF00984.14UDPG_MGDP_dh2093063.40E-31
Glyur003252s00036292.1PF03720.10UDPG_MGDP_dh_C3284515.80E-37


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.075
SRR1783600control7.322
SRR1783602moderate drought stress3.553
SRR1811619moderate drought stress3.747

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.802
DRR006520Root Summer glycyrrhizin high producing strain22.035
DRR006521Root Winter glycyrrhizin high producing strain0.077
DRR006522Root Winter glycyrrhizin high producing strain0.075
DRR006523Root Summer glycyrrhizin low producing strain8.846
DRR006524Root Summer glycyrrhizin low producing strain8.849
DRR006525Leaf Summer glycyrrhizin high producing strain4.362
DRR006526Leaf Summer glycyrrhizin high producing strain4.408

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)54.102
SRR2868004Drought Stress(Tissue:root)27.710
SRR2967015Control (Tissue:root)26.336

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.456
SRR9715740Leave0.205
SRR9715741Leave1.433
SRR9715739Root5.825
SRR9715742Root7.658
SRR9715743Root7.349

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.489
SRR8749028MeJA induced 9h2.830
SRR8749029MeJA induced 9h3.580
SRR8749030Uninduced0.303
SRR8749031Uninduced0.053
SRR8749032Uninduced0.129

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.271
SRR8400027Control-Root20.921

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved