Gene detail information of Glyur003270s00039552.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G61590.26.00E-154Galactose oxidase/kelch repeat superfamily protein
NRXP_007147257.10hypothetical protein PHAVU_006G109200g [Phaseolus vulgaris]
Swissprottr|Q9M310|FBK77_ARATH0F-box/kelch-repeat protein At3g61590
trEMBLtr|V7BRP3|V7BRP3_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW19251.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0327053398621+


Gene family

Gene familysubfamily
Ubiquitin FamilyF-box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006974  cellular response to DNA damage stimulus

GO:0031146  SCF-dependent proteasomal ubiquitin-dependent protein catabolic process

GO:0031571  mitotic G1 DNA damage checkpoint


cellular_component

GO:0019005  SCF ubiquitin ligase complex


molecular_function

GO:0005515  protein binding

GO:0030332  cyclin binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003270s00039552.1PF12937.2F-box-like651041.30E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.654
SRR1783600control23.486
SRR1783602moderate drought stress15.381
SRR1811619moderate drought stress15.297

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.298
DRR006520Root Summer glycyrrhizin high producing strain12.919
DRR006521Root Winter glycyrrhizin high producing strain38.342
DRR006522Root Winter glycyrrhizin high producing strain37.031
DRR006523Root Summer glycyrrhizin low producing strain11.649
DRR006524Root Summer glycyrrhizin low producing strain11.617
DRR006525Leaf Summer glycyrrhizin high producing strain5.330
DRR006526Leaf Summer glycyrrhizin high producing strain5.099

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.639
SRR2868004Drought Stress(Tissue:root)18.226
SRR2967015Control (Tissue:root)17.770

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.708
SRR9715740Leave6.059
SRR9715741Leave8.316
SRR9715739Root25.970
SRR9715742Root41.425
SRR9715743Root37.663

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.613
SRR8749028MeJA induced 9h10.490
SRR8749029MeJA induced 9h12.140
SRR8749030Uninduced5.156
SRR8749031Uninduced3.775
SRR8749032Uninduced5.447

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.244
SRR8400027Control-Root26.377

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved