Gene detail information of Glyur003273s00038202.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G38710.19.00E-116Methylenetetrahydrofolate reductase family protein
NRXP_004491772.10PREDICTED: proline dehydrogenase 2, mitochondrial-like [Cicer arietinum]
COGYP_006874449.17.00E-49Proline dehydrogenase [Emticicia oligotrophica DSM 17448]
Swissprottr|Q6NKX1|PROD2_ARATH8.00E-142Proline dehydrogenase 2, mitochondrial (Precursor)
trEMBLtr|Q6JA03|Q6JA03_MEDSA0Proline dehydrogenase {ECO:0000313|EMBL:AAT45085.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold032732367326346+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00318PRODH EC:1.5.-.- Arginine and proline metabolism map00330


Gene Ontology

biological_process

GO:0006562  proline catabolic process


molecular_function

GO:0004657  proline dehydrogenase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003273s00038202.1PF01619.13Pro_dh142987.40E-73


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control155.376
SRR1783600control157.175
SRR1783602moderate drought stress420.373
SRR1811619moderate drought stress424.171

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.483
DRR006520Root Summer glycyrrhizin high producing strain5.463
DRR006521Root Winter glycyrrhizin high producing strain18.817
DRR006522Root Winter glycyrrhizin high producing strain18.748
DRR006523Root Summer glycyrrhizin low producing strain21.810
DRR006524Root Summer glycyrrhizin low producing strain22.817
DRR006525Leaf Summer glycyrrhizin high producing strain15.874
DRR006526Leaf Summer glycyrrhizin high producing strain16.019

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)86.563
SRR2868004Drought Stress(Tissue:root)179.097
SRR2967015Control (Tissue:root)162.426

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave36.541
SRR9715740Leave24.392
SRR9715741Leave47.155
SRR9715739Root13.347
SRR9715742Root19.262
SRR9715743Root18.323

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.967
SRR8749028MeJA induced 9h4.892
SRR8749029MeJA induced 9h4.013
SRR8749030Uninduced16.745
SRR8749031Uninduced24.571
SRR8749032Uninduced20.211

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root101.122
SRR8400027Control-Root44.550