Gene detail information of Glyur003273s00038202.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G38710.1 | 9.00E-116 | Methylenetetrahydrofolate reductase family protein |
NR | XP_004491772.1 | 0 | PREDICTED: proline dehydrogenase 2, mitochondrial-like [Cicer arietinum] |
COG | YP_006874449.1 | 7.00E-49 | Proline dehydrogenase [Emticicia oligotrophica DSM 17448] |
Swissprot | tr|Q6NKX1|PROD2_ARATH | 8.00E-142 | Proline dehydrogenase 2, mitochondrial (Precursor) |
trEMBL | tr|Q6JA03|Q6JA03_MEDSA | 0 | Proline dehydrogenase {ECO:0000313|EMBL:AAT45085.1} |
Sequence
Transcript Sequence |
---|
Protein Sequence |
---|
Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold03273 | 23673 | 26346 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K00318 | PRODH | EC:1.5.-.- | Arginine and proline metabolism | map00330 |
Gene Ontology
|
Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur003273s00038202.1 | PF01619.13 | Pro_dh | 14 | 298 | 7.40E-73 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 155.376 |
SRR1783600 | control | 157.175 |
SRR1783602 | moderate drought stress | 420.373 |
SRR1811619 | moderate drought stress | 424.171 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 5.483 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 5.463 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 18.817 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 18.748 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 21.810 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 22.817 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.874 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.019 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 86.563 |
SRR2868004 | Drought Stress(Tissue:root) | 179.097 |
SRR2967015 | Control (Tissue:root) | 162.426 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 36.541 |
SRR9715740 | Leave | 24.392 |
SRR9715741 | Leave | 47.155 |
SRR9715739 | Root | 13.347 |
SRR9715742 | Root | 19.262 |
SRR9715743 | Root | 18.323 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 1.967 |
SRR8749028 | MeJA induced 9h | 4.892 |
SRR8749029 | MeJA induced 9h | 4.013 |
SRR8749030 | Uninduced | 16.745 |
SRR8749031 | Uninduced | 24.571 |
SRR8749032 | Uninduced | 20.211 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 101.122 |
SRR8400027 | Control-Root | 44.550 |