Gene detail information of Glyur003276s00039400.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G39760.1 | 2.00E-151 | BTB/POZ/MATH-domains containing protein |
| NR | XP_004503177.1 | 0 | PREDICTED: BTB/POZ and MATH domain-containing protein 3-like [Cicer arietinum] |
| Swissprot | tr|O22286|BPM3_ARATH | 0 | BTB/POZ and MATH domain-containing protein 3 |
| trEMBL | tr|I1LMJ1|I1LMJ1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G34460.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03276 | 17366 | 22936 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | BTB |
| Ubiquitin Family | 3-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003276s00039400.1 | PF00917.21 | MATH | 40 | 157 | 2.10E-09 |
| Glyur003276s00039400.1 | PF00651.26 | BTB | 182 | 299 | 3.30E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 32.596 |
| SRR1783600 | control | 32.719 |
| SRR1783602 | moderate drought stress | 47.393 |
| SRR1811619 | moderate drought stress | 47.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 43.100 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 43.104 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 75.006 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 73.035 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 43.632 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 43.896 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.552 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.987 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 32.366 |
| SRR2868004 | Drought Stress(Tissue:root) | 40.176 |
| SRR2967015 | Control (Tissue:root) | 41.237 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 34.179 |
| SRR9715740 | Leave | 32.393 |
| SRR9715741 | Leave | 44.045 |
| SRR9715739 | Root | 38.696 |
| SRR9715742 | Root | 37.448 |
| SRR9715743 | Root | 35.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 29.861 |
| SRR8749028 | MeJA induced 9h | 35.060 |
| SRR8749029 | MeJA induced 9h | 24.853 |
| SRR8749030 | Uninduced | 29.507 |
| SRR8749031 | Uninduced | 20.466 |
| SRR8749032 | Uninduced | 27.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 38.477 |
| SRR8400027 | Control-Root | 34.856 |