Gene detail information of Glyur003280s00038984.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G63700.1 | 1.00E-82 | zinc ion binding;DNA binding |
| NR | XP_004494744.1 | 0 | PREDICTED: zinc finger CCCH domain-containing protein 19-like [Cicer arietinum] |
| Swissprot | tr|Q9SD34|C3H44_ARATH | 2.00E-64 | Zinc finger CCCH domain-containing protein 44 |
| trEMBL | tr|K7KGZ1|K7KGZ1_SOYBN | 5.00E-142 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G41091.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03280 | 21926 | 26176 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SWI/SNF-BAF60b |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003280s00038984.1 | PF02201.13 | SWIB | 245 | 312 | 5.30E-10 |
| Glyur003280s00038984.1 | PF03126.13 | Plus-3 | 375 | 472 | 1.90E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.162 |
| SRR1783600 | control | 0.166 |
| SRR1783602 | moderate drought stress | 0.098 |
| SRR1811619 | moderate drought stress | 0.092 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.183 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.144 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.133 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.023 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.055 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.203 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.059 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.000 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.031 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.020 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.839 |
| SRR8749028 | MeJA induced 9h | 12.287 |
| SRR8749029 | MeJA induced 9h | 15.077 |
| SRR8749030 | Uninduced | 2.746 |
| SRR8749031 | Uninduced | 1.544 |
| SRR8749032 | Uninduced | 3.137 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.077 |
| SRR8400027 | Control-Root | 0.116 |