Gene detail information of Glyur003286s00036162.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G60390.11.00E-62homeobox-leucine zipper protein 3
NRKEH17820.12.91E-144homeobox associated leucine zipper protein [Medicago truncatula]
Swissprottr|P46602|HAT3_ARATH7.00E-98Homeobox-leucine zipper protein HAT3
trEMBLtr|A0A072TWD7|A0A072TWD7_MEDTR1.00E-144Homeobox associated leucine zipper protein {ECO:0000313|EMBL:KEH17820.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold032862216326044-


Gene family

Gene familysubfamily
Transcription Factors FamilyHB
EAR motif-containing ProteinsHB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0043565  sequence-specific DNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003286s00036162.1PF04618.7HD-ZIP_N51092.90E-23
Glyur003286s00036162.1PF00046.24Homeobox1462003.20E-16
Glyur003286s00036162.1PF02183.13HALZ2022459.60E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control29.054
SRR1783600control29.902
SRR1783602moderate drought stress36.766
SRR1811619moderate drought stress36.614

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain18.307
DRR006520Root Summer glycyrrhizin high producing strain18.119
DRR006521Root Winter glycyrrhizin high producing strain5.174
DRR006522Root Winter glycyrrhizin high producing strain5.008
DRR006523Root Summer glycyrrhizin low producing strain10.250
DRR006524Root Summer glycyrrhizin low producing strain10.140
DRR006525Leaf Summer glycyrrhizin high producing strain16.867
DRR006526Leaf Summer glycyrrhizin high producing strain17.177

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)10.642
SRR2868004Drought Stress(Tissue:root)11.404
SRR2967015Control (Tissue:root)18.521

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.292
SRR9715740Leave42.300
SRR9715741Leave12.197
SRR9715739Root39.011
SRR9715742Root27.569
SRR9715743Root29.351

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h58.888
SRR8749028MeJA induced 9h54.771
SRR8749029MeJA induced 9h51.665
SRR8749030Uninduced28.159
SRR8749031Uninduced1.278
SRR8749032Uninduced4.102

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root39.928
SRR8400027Control-Root52.379

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved