Gene detail information of Glyur003306s00035918.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03306 | 19464 | 25879 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K20795 | PRDM6 | EC:2.1.1.43 | Lysine degradation | map00310 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.115 |
| SRR1783600 | control | 0.422 |
| SRR1783602 | moderate drought stress | 0.544 |
| SRR1811619 | moderate drought stress | 0.517 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.226 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.295 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.195 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.187 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.241 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.995 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.722 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.935 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.200 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.114 |
| SRR2967015 | Control (Tissue:root) | 0.174 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.187 |
| SRR9715740 | Leave | 0.237 |
| SRR9715741 | Leave | 0.078 |
| SRR9715739 | Root | 0.065 |
| SRR9715742 | Root | 0.050 |
| SRR9715743 | Root | 0.075 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.229 |
| SRR8749028 | MeJA induced 9h | 0.097 |
| SRR8749029 | MeJA induced 9h | 0.107 |
| SRR8749030 | Uninduced | 0.530 |
| SRR8749031 | Uninduced | 0.080 |
| SRR8749032 | Uninduced | 0.281 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.485 |
| SRR8400027 | Control-Root | 0.399 |