Gene detail information of Glyur003314s00037686.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32990.1 | 3.00E-129 | glycosyl hydrolase 9B8 |
| NR | XP_004502038.1 | 0 | PREDICTED: endoglucanase 11-like [Cicer arietinum] |
| COG | YP_004908734.1 | 6.00E-72 | putative endoglucanase precursor [Kitasatospora setae KM-6054] |
| Swissprot | tr|O48766|GUN11_ARATH | 7.00E-157 | Endoglucanase 11 (Precursor) |
| trEMBL | tr|G7J6Q9|G7J6Q9_MEDTR | 0 | Endoglucanase {ECO:0000256|RuleBase:RU361166} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03314 | 18566 | 25435 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003314s00037686.1 | PF00759.14 | Glyco_hydro_9 | 55 | 319 | 2.40E-105 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.296 |
| SRR1783600 | control | 4.299 |
| SRR1783602 | moderate drought stress | 3.577 |
| SRR1811619 | moderate drought stress | 3.627 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.383 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.102 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.885 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.831 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.885 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.882 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 6.794 |
| SRR2868004 | Drought Stress(Tissue:root) | 3.069 |
| SRR2967015 | Control (Tissue:root) | 3.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.790 |
| SRR9715740 | Leave | 0.158 |
| SRR9715741 | Leave | 0.530 |
| SRR9715739 | Root | 1.038 |
| SRR9715742 | Root | 2.520 |
| SRR9715743 | Root | 2.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.706 |
| SRR8749028 | MeJA induced 9h | 0.252 |
| SRR8749029 | MeJA induced 9h | 0.122 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.921 |
| SRR8400027 | Control-Root | 9.307 |