Gene detail

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Gene detail information of Glyur003328s00038635.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G67030.1	8.00E-117	zeaxanthin epoxidase (ZEP) (ABA1)
NR	XP_006586729.1	0	PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X2 [Glycine max]
COG	YP_003321595.1	4.00E-52	Zeaxanthin epoxidase [Sphaerobacter thermophilus DSM 20745]
Swissprot	tr\|Q0JCU7\|ZEP_ORYSJ	4.00E-154	Zeaxanthin epoxidase, chloroplastic (Precursor)
trEMBL	tr\|K7LB11\|K7LB11_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G00260.7}

Sequence

Transcript Sequence

>Glyur003328s00038635.1
CAAGGAAGGAAAAGGAAGTTGAGTGTGCTTATAGCTGGTGGGGGTATTGGTGGGCTTGTTTTGGCTCTGGCTGCAAAGCATAGAGGGTATGAAGTGAAGGTATTTGAAAAGGATCTGAGTGCTGTTAGAGGGGAAGGTAGGCACCGTGGCCCCATTCAGCTNCTGAGTAGTGCTCTTGCTGTGTTGGAAGCAATTGACCAGAGTGTTGCAAANCAGATAATGGATGCAGGTTGTGTCACTGGCAATAGGACTAATGGCCTTGCTGATGCCTTCCCTAAACTTGTAGTTGAACTTGAAGAGATCTTATTGAGGTCTTGGATTCTTGCAATTCCTTTTCTGTATATTGCATATGACAATCTTGAAAGGTTCACTGAGTTTGATCTTTTGACTCCTGCTTCAAGGAGAGGGCTTCCTGTTACTCTAGTCATATGTAGAATGACACTGCAAGATATATTAGTCAATGCAGTTGGTTCCAANATACTTAGAAACAAATCTAAAGTTGTGGATTTTATTCAAGAACCTAGCAAGGTCAGAGTGGTCCTTGAAAATGGACAGCACTATGATGGTGATGTTTTAATAGGGGCAGATGGAATATGGTCAGAAGTAAAATATACCATCCTTTTCCTTCTAGTGCGTTCGAAACTCTTTGGCTGGCAAGAAGCAAATTACTCAGGTTTCACTTGTTATAGTGGATTAACAGACTATGTGCCTCCATATATTGATACTATTGGTTATAGGGTGTTCTTGGGGTTGAACCAGTACTTTGTTGCTTCAGATGTTGGCCATGGGAAGATGCAGTGGTATGCTTTCCATGGGGAACCCCCTTCAAGTGCCCATTTCCCAGAAGGTAAGAAGAAGAGACTGATGAATATATTTGGTAACTGGTGCAATGAAGTAACCACACTCATATCAGAAACACCAGAGGATATGATTCTGCAGAGGGATATATATGATAGAGACATGATCTACACTTGGGGAATTGGGAGAGTGACTTTATTAGGTGATGCAGCACATCCAATGCAACCAAATCTTGGTCAGGGAGGATGTTTGGCAATAGAGGATTGTTACCAACTGATACTTGAGCTTGACAAGGTTGCTAAACATGGTTCTGAGGAGTCTGAAGTTATCTCAGCCCTTAGAAGATACGAGAAGAAAAGAATCCCACGAGTCAGGGTGTTGCACATAGCTACNAGGATGGCATCAAAAATGCTAGTCAACTACAGACCTTATATTGAATTCAGATTTTGGCCTCTTTCAGTTGTGGTGAACATGTACATGCAACACGTTTCCAAAAATAAAAGGCTTACCAATTTTAGCATTGCGTGATTGTAGCTAGCTAGAATAATCTGTTGGGTGGG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold03328	3881	8541	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K09838	ZEP, ABA1	EC:1.14.15.21	Carotenoid biosynthesis	map00906

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003328s00038635.1	PF01494.14	FAD_binding_3	322	391	2.00E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.987
SRR1783600	control	9.907
SRR1783602	moderate drought stress	6.972
SRR1811619	moderate drought stress	6.931

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.830
DRR006520	Root Summer glycyrrhizin high producing strain	8.017
DRR006521	Root Winter glycyrrhizin high producing strain	4.578
DRR006522	Root Winter glycyrrhizin high producing strain	4.853
DRR006523	Root Summer glycyrrhizin low producing strain	5.448
DRR006524	Root Summer glycyrrhizin low producing strain	5.485
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.572
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.698

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	12.874
SRR2868004	Drought Stress(Tissue:root)	9.910
SRR2967015	Control (Tissue:root)	10.438

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.723
SRR9715740	Leave	2.680
SRR9715741	Leave	3.653
SRR9715739	Root	1.997
SRR9715742	Root	4.726
SRR9715743	Root	4.079

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.009
SRR8749028	MeJA induced 9h	12.032
SRR8749029	MeJA induced 9h	13.424
SRR8749030	Uninduced	6.300
SRR8749031	Uninduced	3.769
SRR8749032	Uninduced	3.089

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	17.805
SRR8400027	Control-Root	16.810