Gene detail information of Glyur003332s00035255.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13840.20FIZZY-related 3
NRXP_003552875.10PREDICTED: protein FIZZY-RELATED 3-like [Glycine max]
COGYP_005072249.13.00E-27WD-40 repeat protein [Arthrospira platensis NIES-39]
Swissprottr|Q8LPL5|FZR3_ARATH0Protein FIZZY-RELATED 3
trEMBLtr|I1MZC1|I1MZC1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G04240.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold03332851612207-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003332s00035255.1PF00400.27WD402693000.045
Glyur003332s00035255.1PF00400.27WD403123473.80E-06
Glyur003332s00035255.1PF00400.27WD403533921.90E-07
Glyur003332s00035255.1PF00400.27WD404424771.20E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.703
SRR1783600control4.533
SRR1783602moderate drought stress3.824
SRR1811619moderate drought stress3.592

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.602
DRR006520Root Summer glycyrrhizin high producing strain6.317
DRR006521Root Winter glycyrrhizin high producing strain0.061
DRR006522Root Winter glycyrrhizin high producing strain0.120
DRR006523Root Summer glycyrrhizin low producing strain1.591
DRR006524Root Summer glycyrrhizin low producing strain1.686
DRR006525Leaf Summer glycyrrhizin high producing strain1.438
DRR006526Leaf Summer glycyrrhizin high producing strain1.491

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)25.799
SRR2868004Drought Stress(Tissue:root)11.123
SRR2967015Control (Tissue:root)16.932

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.751
SRR9715740Leave0.206
SRR9715741Leave0.726
SRR9715739Root1.379
SRR9715742Root2.240
SRR9715743Root2.086

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h22.039
SRR8749028MeJA induced 9h18.285
SRR8749029MeJA induced 9h16.440
SRR8749030Uninduced2.532
SRR8749031Uninduced0.668
SRR8749032Uninduced2.219

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.822
SRR8400027Control-Root16.105

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved