Gene detail information of Glyur003343s00045195.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G32640.11.00E-151Basic helix-loop-helix (bHLH) DNA-binding family protein
NRXP_004509726.10PREDICTED: transcription factor MYC2-like [Cicer arietinum]
Swissprottr|Q39204|MYC2_ARATH0Transcription factor MYC2
trEMBLtr|V7CE62|V7CE62_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW28429.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold033431286214814-


Gene family

Gene familysubfamily
Transcription Factors FamilybHLH


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0046983  protein dimerization activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003343s00045195.1PF14215.1bHLH-MYC_N652512.30E-51
Glyur003343s00045195.1PF00010.21HLH4665114.00E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control73.136
SRR1783600control73.585
SRR1783602moderate drought stress92.974
SRR1811619moderate drought stress92.396

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain407.495
DRR006520Root Summer glycyrrhizin high producing strain402.246
DRR006521Root Winter glycyrrhizin high producing strain2.034
DRR006522Root Winter glycyrrhizin high producing strain1.978
DRR006523Root Summer glycyrrhizin low producing strain256.746
DRR006524Root Summer glycyrrhizin low producing strain254.381
DRR006525Leaf Summer glycyrrhizin high producing strain80.031
DRR006526Leaf Summer glycyrrhizin high producing strain79.986

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)65.654
SRR2868004Drought Stress(Tissue:root)140.916
SRR2967015Control (Tissue:root)253.162

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave363.396
SRR9715740Leave470.259
SRR9715741Leave424.669
SRR9715739Root707.256
SRR9715742Root753.022
SRR9715743Root764.215

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h94.746
SRR8749028MeJA induced 9h48.349
SRR8749029MeJA induced 9h25.986
SRR8749030Uninduced30.628
SRR8749031Uninduced3.640
SRR8749032Uninduced17.484

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root92.217
SRR8400027Control-Root171.260

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved