Gene detail information of Glyur003344s00038532.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G54360.1 | 7.00E-135 | zinc ion binding |
| NR | XP_003522869.1 | 0 | PREDICTED: uncharacterized protein LOC100813258 isoform X1 [Glycine max] |
| trEMBL | tr|K7KJR6|K7KJR6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G15130.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03344 | 3461 | 8166 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 14.760 |
| SRR1783600 | control | 14.817 |
| SRR1783602 | moderate drought stress | 14.624 |
| SRR1811619 | moderate drought stress | 14.781 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 29.309 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.388 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.339 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 27.024 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.494 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.597 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 44.996 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 45.580 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 23.345 |
| SRR2868004 | Drought Stress(Tissue:root) | 28.614 |
| SRR2967015 | Control (Tissue:root) | 27.270 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 55.902 |
| SRR9715740 | Leave | 75.402 |
| SRR9715741 | Leave | 58.035 |
| SRR9715739 | Root | 9.604 |
| SRR9715742 | Root | 20.945 |
| SRR9715743 | Root | 20.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.603 |
| SRR8749028 | MeJA induced 9h | 33.917 |
| SRR8749029 | MeJA induced 9h | 20.623 |
| SRR8749030 | Uninduced | 20.893 |
| SRR8749031 | Uninduced | 23.647 |
| SRR8749032 | Uninduced | 16.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 31.166 |
| SRR8400027 | Control-Root | 30.635 |