Gene detail information of Glyur003344s00038535.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G04940.20SU(VAR)3-9 homolog 1
NRKHN06910.10Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1 [Glycine soja]
COGNP_295256.11.00E-19hypothetical protein DR_1533 [Deinococcus radiodurans R1]
Swissprottr|Q9FF80|SUVH1_ARATH0Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1
trEMBLtr|I1JVX0|I1JVX0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G15120.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold033441481519945+


Gene family

Gene familysubfamily
Transcription Factors FamilySET


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11420EHMT EC:2.1.1.43 Lysine degradation map00310
Longevity regulating pathway - mammalmap04211


Gene Ontology

biological_process

GO:0016571  histone methylation

GO:0034968  histone lysine methylation


cellular_component

GO:0005634  nucleus


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0018024  histone-lysine N-methyltransferase activity

GO:0042393  histone binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003344s00038535.2PF02182.12SAD_SRA2133651.10E-54
Glyur003344s00038535.2PF05033.11Pre-SET3944927.40E-19
Glyur003344s00038535.2PF00856.23SET5116471.60E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control26.483
SRR1783600control26.033
SRR1783602moderate drought stress26.831
SRR1811619moderate drought stress26.597

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain31.432
DRR006520Root Summer glycyrrhizin high producing strain30.422
DRR006521Root Winter glycyrrhizin high producing strain33.433
DRR006522Root Winter glycyrrhizin high producing strain31.971
DRR006523Root Summer glycyrrhizin low producing strain24.543
DRR006524Root Summer glycyrrhizin low producing strain23.935
DRR006525Leaf Summer glycyrrhizin high producing strain12.996
DRR006526Leaf Summer glycyrrhizin high producing strain12.703

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.598
SRR2868004Drought Stress(Tissue:root)22.346
SRR2967015Control (Tissue:root)25.179

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.539
SRR9715740Leave17.821
SRR9715741Leave14.244
SRR9715739Root6.969
SRR9715742Root27.901
SRR9715743Root23.000

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.213
SRR8749028MeJA induced 9h16.637
SRR8749029MeJA induced 9h12.031
SRR8749030Uninduced9.520
SRR8749031Uninduced5.210
SRR8749032Uninduced5.586

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.711
SRR8400027Control-Root29.695

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved