Gene detail information of Glyur003371s00038970.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G32850.90nuclear poly(a) polymerase
NRXP_004510317.10PREDICTED: poly(A) polymerase-like isoform X2 [Cicer arietinum]
COGYP_005369064.18.00E-40polynucleotide Adenyltransferase [Corallococcus coralloides DSM 2259]
Swissprottr|Q0WLA9|PAPS4_ARATH0Nuclear poly(A) polymerase 4 {ECO:0000303|PubMed:18479511}
trEMBLtr|I1KV14|I1KV14_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G21440.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold033712002625497+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14376PAP EC:2.7.7.19 mRNA surveillance pathway map03015


Gene Ontology

biological_process

GO:0031123  RNA 3'-end processing

GO:0043631  RNA polyadenylation


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003723  RNA binding

GO:0004652  polynucleotide adenylyltransferase activity

GO:0016779  nucleotidyltransferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003371s00038970.1PF04928.12PAP_central233711.20E-107
Glyur003371s00038970.1PF01909.18NTP_transf_21021687.40E-05
Glyur003371s00038970.1PF04926.10PAP_RNA-bind3735062.40E-31


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control41.874
SRR1783600control41.866
SRR1783602moderate drought stress68.072
SRR1811619moderate drought stress67.462

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain54.210
DRR006520Root Summer glycyrrhizin high producing strain53.520
DRR006521Root Winter glycyrrhizin high producing strain116.758
DRR006522Root Winter glycyrrhizin high producing strain113.188
DRR006523Root Summer glycyrrhizin low producing strain97.805
DRR006524Root Summer glycyrrhizin low producing strain97.084
DRR006525Leaf Summer glycyrrhizin high producing strain34.219
DRR006526Leaf Summer glycyrrhizin high producing strain33.940

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)83.740
SRR2868004Drought Stress(Tissue:root)98.187
SRR2967015Control (Tissue:root)103.238

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave63.647
SRR9715740Leave49.500
SRR9715741Leave93.897
SRR9715739Root30.019
SRR9715742Root77.690
SRR9715743Root70.431

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h46.578
SRR8749028MeJA induced 9h92.806
SRR8749029MeJA induced 9h53.197
SRR8749030Uninduced52.098
SRR8749031Uninduced74.442
SRR8749032Uninduced62.631

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root91.701
SRR8400027Control-Root93.630

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved