Gene detail information of Glyur003383s00041886.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20860.1 | 3.00E-117 | Plant invertase/pectin methylesterase inhibitor superfamily |
| NR | XP_003534978.2 | 0 | PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase/pectinesterase inhibitor 54-like [Glycine max] |
| COG | YP_005010945.1 | 1.00E-45 | pectinesterase [Niastella koreensis GR20-10] |
| Swissprot | tr|Q3E989|PME54_ARATH | 3.00E-144 | Pectinesterase 54 (Precursor) |
| trEMBL | tr|V7B2B6|V7B2B6_PHAVU | 0 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03383 | 3703 | 9727 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01051 | E3.1.1.11 | EC:3.1.1.11 | Pentose and glucuronate interconversions | map00040 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003383s00041886.1 | PF04043.10 | PMEI | 31 | 178 | 7.90E-21 |
| Glyur003383s00041886.1 | PF01095.14 | Pectinesterase | 241 | 526 | 4.90E-112 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.060 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.059 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.060 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.060 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.474 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.411 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.034 |
| SRR9715740 | Leave | 1.617 |
| SRR9715741 | Leave | 1.499 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.170 |
| SRR9715743 | Root | 0.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.039 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.091 |