Gene detail information of Glyur003413s00043887.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G08455.1 | 2.00E-71 | BTB/POZ domain-containing protein |
| NR | AFK48678.1 | 4.48E-136 | unknown [Medicago truncatula] |
| Swissprot | tr|Q6DBN1|Y4845_ARATH | 8.00E-108 | BTB/POZ domain-containing protein At4g08455 |
| trEMBL | tr|I3T836|I3T836_MEDTR | 2.00E-136 | Uncharacterized protein {ECO:0000313|EMBL:AFK48678.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03413 | 3887 | 8023 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TRAF |
| Ubiquitin Family | BTB |
| Ubiquitin Family | 3-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003413s00043887.1 | PF00651.26 | BTB | 58 | 160 | 3.80E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 28.940 |
| SRR1783600 | control | 29.330 |
| SRR1783602 | moderate drought stress | 37.759 |
| SRR1811619 | moderate drought stress | 37.411 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 65.731 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 65.424 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 28.232 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.988 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 78.094 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 79.440 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.632 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.013 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 42.043 |
| SRR2868004 | Drought Stress(Tissue:root) | 42.039 |
| SRR2967015 | Control (Tissue:root) | 41.765 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 16.107 |
| SRR9715740 | Leave | 17.282 |
| SRR9715741 | Leave | 16.989 |
| SRR9715739 | Root | 39.027 |
| SRR9715742 | Root | 40.014 |
| SRR9715743 | Root | 37.157 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 59.142 |
| SRR8749028 | MeJA induced 9h | 24.488 |
| SRR8749029 | MeJA induced 9h | 36.643 |
| SRR8749030 | Uninduced | 14.428 |
| SRR8749031 | Uninduced | 4.195 |
| SRR8749032 | Uninduced | 9.582 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 39.229 |
| SRR8400027 | Control-Root | 38.178 |