Gene detail

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Gene detail information of Glyur003419s00039752.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G17920.2	Cobalamin-independent synthase family protein
NR	NP_001235794.1	methionine synthase [Glycine max]
COG	YP_744604.1	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase [Granulibacter bethesdensis CGDNIH1]
Swissprot	tr\|P93263\|METE_MESCR	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
trEMBL	tr\|Q71EW8\|Q71EW8_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G04240.1}

Sequence

Transcript Sequence

>Glyur003419s00039752.1
AATTTATTTAAGAAAAATGGAAGGAGTGAGGGAGTGAGGGGGAGATTCTCGTGTTTTTTCCTCATCACTCAGATCTGAGCAAGAAAACGGCTATAAATAACCCGAAAGCCATTCCATATCGCTCGCACTCTGTTCTCTGCTTCAATCTNCTCCTTAAGAAGCGAAGAAGAACCACAGAGAACTAGTCTCCTACACTACCCCCGAAAGAAAAATGGCGTCTCATATTGTTGGATACCCTCGCATGGGTCCCAAGAGAGAGCTCAAGTTTGCTCTGGAATCTTTCTGGGATGGGAAGAGCAGTGCCGACGATTTGAAGAAGGTTTCTGCTGATCTCAGGGCTTCAATCTGGAAGCAGATGGCTGATGCAGGGATCAAGTACATCCCAAGCAACACTTTCTCCTACTACGATCAGGTGCTCGATGCCACCGCCACCCTCGGCGCCGTCCCTCCCCGTTACGGATGGACCGGCGGTGAGATTGGCTTTGACACCTACTTCTCCATGGCCAGGGGTAATGCTACCGTCCCTGCTATGGAGATGACCAAGTGGTTCGACACCAACTACCACTTTATTGTCCCCGAATTGGGACCTGAGGTGAACTTCAGTTATGCTTCTCACAAGGCCGTTGATGANTACAAGGAGGCCAAGGCGCTTGGAGTAGAAACCGTTCCTGTCCTCGTTGGCCCTGTATCATACTTGTTGCTCTCCAAACCTGCTAAGGGTGTTGAGAAATCCTTTTCTCTCCTCTCTTTGCTCCCCAAAGTCCTTGCTATCTACAAGGAAGTTGTTGCTGATCTTAAGGCAGCCGGTGCTTCATGGATTCAATTTGATGAACCTACCCTTGTCTTGGATCTTGACCCTCACAAGTTGCAAGCATTTACTGATGCATATGCAGAACTTGCACCCGCTCTATCTGGTCTGAATGTTCTTATTGAGACCTACTTTGCTGACATCCCTGCTGAGGCATTCAAGACCCTCACATCTTTGAGTGGTGTCACTGCTTATGGATTTGATTTGGTCCGTGGAACGAAGACTCTTGATTTGATCAAGGGTGGATTTCCCAGTGGAAAATACCTCTTTGCTGGAGTGGTTGATGGAAGGAACATTTGGGCTAATGATCTTGCTNCTTCTCTCACTACATTGCAGGCTCTTGAGGGCGTTGTGGGCAAAGACAAACTTGTTGTGTCCACCTCCTGCTCACTTCTTCACACTGCTGTTGATCTTGTTAATGAGACCAAGTTGGATGATGAGATTAAGTCATGGCTCGCTTTTGCTGCCCAAAAAATTGTTGAAGTAAATGCATTGGCTCATGCATTGGCTGGCAACAAGAATGAGGCCTTCTTCTCTGCTAACGCTGCAGCTCAGGCTTCAAGAAAGTCCTCTCCAAGAGTGACTAACGAGGCTGTTCAGAAGGCTGCTGCTGCATTGAAGGGTTCTGACCATCGCCGTGCTACCAATGTCAGTACCAGGCTGGATGCTCAACAAAAGAAGCTTAATCTTCCAATCCTCCCAACCACCACTATTGGATCCTTCCCTCAGACTGTGGAACTGAGGAGGGTACGCCGTGANTTCAAGGCTAACAAGATCTCTGAGGAAGAGTACATCAAGCAAATTAAGGAGGAAATCCGCAAAGTTGTTGAGCTTCAAGAAGAGCTTGATATTGATGTNCTAGTACACGGAGAGCCTGAGAGGAATGACATGGTTGAGTACTTCGGCGAGCAGTTGTCGGGCTTTGCCTTCACTGTTAATGGGTGGGTGCAATCCTATGGATCCCGTTGCGTGAAGCCACCAATCATCTATGGTGATGTGAGCCGCCCAAAGCCAATGACCGTCTTCTGGTCATCTCTTGCTCAGAGCTTTACCAAACGTCCAATGAAGGGAATGCTTACNGGCCCTGTCACCATTCTCAACTGGTCCTTTGTTAGAAATGATCAGCCTAGATCTGAGACCTGCTACCAGATTGCTTTGGCTATCAAGGACGAAGTAGAAGACCTTGAAGGTGCTGGCATTGGTGTTATCCAAATTGATGAGGCTGCTTTGAGAGAGGGGCTACCACTGAGGAAATCAGAGCAAGCTCACTACTTGGACTGGGCTGTCCATTCCTTCAGGATCACCAATGTTGGTGTTCAGGATACCACTCAGATCCACACTCACATGTGCTACTCTAACTTCAACGACATCATTCACTCGATCATTGATATGGATGCTGATGTGATCACCATTGAGAACTCCCGTTCNGATGAGAAGCTCCTGTCNGTCTTCCGCGAGGGAGTGAAGTACGGTGCCGGAATTGGCCCCGGTGTCTACGACATCCACTCCCCAAGAATACCACCAACTGAAGAAATTGCTGACAGGATCAACAAGATGCTTGCAGTGCTTGAGAAGAACATCTTGTGGGTCAACCCTGACTGTGGTCTCAAGACCCGCAAGTACACAGAGGTTAAGCCAGCCCTCACAAACATGGTTGCCGCGGCCAAACAAATCCGCAATGAGCTCGCTAAGTGAACAACGGTATAAGAAAAAACAGAATCTCAGTAGTCATATTTGGCTCTGCTTGATTTTACACATCAAAAGGAAAAATGTTCTATTTTGGTTGTTTCAATAACTGTGTGGAATATTTAGGTTTTTAGTATGCTCTGTGAGCAATTGATCCCCCTCCCTCCCCTTTTCAATATTCTGTTTTTCCAAAATGTCTGTATGTGGCTTTGCCGCACNCCTTATTG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold03419	12955	18248	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00549	metE	EC:2.1.1.14	Biosynthesis of amino acids	map01230
			Cysteine and methionine metabolism	map00270
			Selenocompound metabolism	map00450

Gene Ontology

biological_process

GO:0008652 cellular amino acid biosynthetic process

GO:0009086 methionine biosynthetic process

molecular_function GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity GO:0008270 zinc ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003419s00039752.1	PF08267.7	Meth_synt_1	3	316	7.00E-113
Glyur003419s00039752.1	PF01717.13	Meth_synt_2	432	756	7.50E-148

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	573.227
SRR1783600	control	575.262
SRR1783602	moderate drought stress	379.559
SRR1811619	moderate drought stress	376.768

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	491.578
DRR006520	Root Summer glycyrrhizin high producing strain	486.403
DRR006521	Root Winter glycyrrhizin high producing strain	173.434
DRR006522	Root Winter glycyrrhizin high producing strain	168.172
DRR006523	Root Summer glycyrrhizin low producing strain	278.251
DRR006524	Root Summer glycyrrhizin low producing strain	278.005
DRR006525	Leaf Summer glycyrrhizin high producing strain	466.290
DRR006526	Leaf Summer glycyrrhizin high producing strain	464.888

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1178.528
SRR2868004	Drought Stress(Tissue:root)	703.436
SRR2967015	Control (Tissue:root)	795.759

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	458.175
SRR9715740	Leave	314.245
SRR9715741	Leave	381.750
SRR9715739	Root	404.081
SRR9715742	Root	514.624
SRR9715743	Root	482.914

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	746.443
SRR8749028	MeJA induced 9h	791.436
SRR8749029	MeJA induced 9h	442.415
SRR8749030	Uninduced	563.975
SRR8749031	Uninduced	558.563
SRR8749032	Uninduced	352.054

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	772.525
SRR8400027	Control-Root	664.803