Gene detail information of Glyur003449s00039863.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G45440.15.00E-140dihydrodipicolinate synthase
NRXP_004492645.10PREDICTED: 4-hydroxy-tetrahydrodipicolinate synthase, chloroplastic-like [Cicer arietinum]
COGYP_270348.11.00E-105dihydrodipicolinate synthase [Colwellia psychrerythraea 34H]
Swissprottr|Q42800|DAPA_SOYBN04-hydroxy-tetrahydrodipicolinate synthase, chloroplastic (Precursor)
trEMBLtr|I1L6T8|I1L6T8_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G40460.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold034491345116674+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01714dapA EC:4.3.3.7 Biosynthesis of amino acids map01230
Lysine biosynthesismap00300
Monobactam biosynthesismap00261


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0009089  lysine biosynthetic process via diaminopimelate


molecular_function

GO:0003824  catalytic activity

GO:0008840  4-hydroxy-tetrahydrodipicolinate synthase

GO:0016829  lyase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003449s00039863.1PF00701.17DHDPS643387.70E-101


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control154.255
SRR1783600control155.481
SRR1783602moderate drought stress53.492
SRR1811619moderate drought stress53.297

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain158.335
DRR006520Root Summer glycyrrhizin high producing strain156.494
DRR006521Root Winter glycyrrhizin high producing strain9.829
DRR006522Root Winter glycyrrhizin high producing strain9.711
DRR006523Root Summer glycyrrhizin low producing strain34.648
DRR006524Root Summer glycyrrhizin low producing strain34.219
DRR006525Leaf Summer glycyrrhizin high producing strain12.403
DRR006526Leaf Summer glycyrrhizin high producing strain12.432

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)149.924
SRR2868004Drought Stress(Tissue:root)94.496
SRR2967015Control (Tissue:root)67.510

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave28.674
SRR9715740Leave31.036
SRR9715741Leave27.027
SRR9715739Root191.146
SRR9715742Root176.565
SRR9715743Root185.185

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h68.634
SRR8749028MeJA induced 9h47.718
SRR8749029MeJA induced 9h56.427
SRR8749030Uninduced31.269
SRR8749031Uninduced17.224
SRR8749032Uninduced35.787

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root112.329
SRR8400027Control-Root139.643

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved