Gene detail information of Glyur003457s00041966.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G18880.1 | 5.00E-49 | heat shock transcription factor A4A |
| NR | AGJ83756.1 | 5.95E-109 | heat stress transcription factor A-4a-like protein [Caragana korshinskii] |
| Swissprot | tr|O49403|HFA4A_ARATH | 2.00E-78 | Heat stress transcription factor A-4a |
| trEMBL | tr|R9R6C4|R9R6C4_9FABA | 2.00E-109 | Heat stress transcription factor A-4a-like protein {ECO:0000313|EMBL:AGJ83756.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03457 | 12903 | 14452 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HSF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003457s00041966.1 | PF00447.12 | HSF_DNA-bind | 16 | 106 | 5.80E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.110 |
| SRR1783600 | control | 0.183 |
| SRR1783602 | moderate drought stress | 0.105 |
| SRR1811619 | moderate drought stress | 0.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.319 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.698 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.189 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.238 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.770 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.846 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.420 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.230 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.032 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.074 |
| SRR2967015 | Control (Tissue:root) | 0.038 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.077 |
| SRR9715740 | Leave | 0.071 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.114 |
| SRR9715743 | Root | 0.113 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.101 |
| SRR8749029 | MeJA induced 9h | 0.023 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 1.329 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.006 |