Gene detail information of Glyur003473s00042321.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G07370.14.00E-103carboxyl terminus of HSC70-interacting protein
NRKHN33193.10E3 ubiquitin-protein ligase CHIP [Glycine soja]
COGYP_001958461.14.00E-11hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprottr|Q9SRS9|CHIP_ARATH3.00E-136E3 ubiquitin-protein ligase CHIP {ECO:0000305}
trEMBLtr|K7MFY9|K7MFY9_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G09930.6}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0347348178075+


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K09561STUB1, CHIP EC:2.3.2.27 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120


Gene Ontology

biological_process

GO:0016567  protein ubiquitination


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005515  protein binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003473s00042321.1PF13414.1TPR_1134983.30E-16
Glyur003473s00042321.1PF07719.12TPR_21031310.00045
Glyur003473s00042321.1PF04564.10U-box2242961.20E-26


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.785
SRR1783600control16.423
SRR1783602moderate drought stress19.682
SRR1811619moderate drought stress19.223

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain24.586
DRR006520Root Summer glycyrrhizin high producing strain24.366
DRR006521Root Winter glycyrrhizin high producing strain39.095
DRR006522Root Winter glycyrrhizin high producing strain38.122
DRR006523Root Summer glycyrrhizin low producing strain22.772
DRR006524Root Summer glycyrrhizin low producing strain22.787
DRR006525Leaf Summer glycyrrhizin high producing strain8.383
DRR006526Leaf Summer glycyrrhizin high producing strain8.575

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)45.154
SRR2868004Drought Stress(Tissue:root)54.943
SRR2967015Control (Tissue:root)60.685

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.962
SRR9715740Leave13.747
SRR9715741Leave21.280
SRR9715739Root17.812
SRR9715742Root16.655
SRR9715743Root18.143

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.492
SRR8749028MeJA induced 9h21.293
SRR8749029MeJA induced 9h17.369
SRR8749030Uninduced17.327
SRR8749031Uninduced27.233
SRR8749032Uninduced34.191

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root44.389
SRR8400027Control-Root41.918

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved