Gene detail information of Glyur003474s00034634.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G70730.24.00E-64Phosphoglucomutase/phosphomannomutase family protein
NRAFK46078.18.29E-83unknown [Lotus japonicus]
COGYP_007057135.11.00E-45phosphoglucomutase [Rivularia sp. PCC 7116]
Swissprottr|Q9SM60|PGMC_PEA2.00E-78Phosphoglucomutase, cytoplasmic
trEMBLtr|I3T0N6|I3T0N6_LOTJA3.00E-83Uncharacterized protein {ECO:0000313|EMBL:AFK46078.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold034741034317384+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01835pgm EC:5.4.2.2 Glycolysis / Gluconeogenesis map00010
Pentose phosphate pathwaymap00030
Galactose metabolismmap00052
Starch and sucrose metabolismmap00500
Amino sugar and nucleotide sugar metabolismmap00520
Purine metabolismmap00230
Streptomycin biosynthesismap00521


Gene Ontology

biological_process

GO:0005975  carbohydrate metabolic process

GO:0071704  organic substance metabolic process


molecular_function

GO:0000287  magnesium ion binding

GO:0016868  intramolecular transferase activity, phosphotransferases


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003474s00034634.2PF02878.11PGM_PMM_I171649.70E-36
Glyur003474s00034634.2PF02879.11PGM_PMM_II2022891.30E-09
Glyur003474s00034634.2PF02880.11PGM_PMM_III2974193.10E-28
Glyur003474s00034634.2PF00408.15PGM_PMM_IV4755254.30E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control79.733
SRR1783600control79.312
SRR1783602moderate drought stress36.513
SRR1811619moderate drought stress36.685

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain86.577
DRR006520Root Summer glycyrrhizin high producing strain86.478
DRR006521Root Winter glycyrrhizin high producing strain79.198
DRR006522Root Winter glycyrrhizin high producing strain77.578
DRR006523Root Summer glycyrrhizin low producing strain54.822
DRR006524Root Summer glycyrrhizin low producing strain54.573
DRR006525Leaf Summer glycyrrhizin high producing strain75.467
DRR006526Leaf Summer glycyrrhizin high producing strain75.090

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)160.706
SRR2868004Drought Stress(Tissue:root)100.001
SRR2967015Control (Tissue:root)87.610

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave64.491
SRR9715740Leave65.338
SRR9715741Leave59.768
SRR9715739Root34.138
SRR9715742Root61.369
SRR9715743Root59.483

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h82.699
SRR8749028MeJA induced 9h70.354
SRR8749029MeJA induced 9h73.020
SRR8749030Uninduced25.012
SRR8749031Uninduced26.741
SRR8749032Uninduced25.315

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root151.750
SRR8400027Control-Root167.474

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved