Gene detail information of Glyur003477s00044227.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G02065.1 | 2.00E-39 | squamosa promoter binding protein-like 8 |
| NR | XP_003521087.1 | 3.37E-104 | PREDICTED: squamosa promoter-binding-like protein 8-like [Glycine max] |
| Swissprot | tr|Q8GXL3|SPL8_ARATH | 2.00E-70 | Squamosa promoter-binding-like protein 8 |
| trEMBL | tr|I1JMW0|I1JMW0_SOYBN | 1.00E-105 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G27180.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03477 | 13872 | 23702 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SBP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003477s00044227.1 | PF03110.9 | SBP | 160 | 237 | 4.80E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.185 |
| SRR1783600 | control | 0.184 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.408 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.404 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.125 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.615 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.528 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.533 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.465 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.154 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.373 |
| SRR2967015 | Control (Tissue:root) | 0.164 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.453 |
| SRR9715740 | Leave | 0.193 |
| SRR9715741 | Leave | 0.083 |
| SRR9715739 | Root | 0.125 |
| SRR9715742 | Root | 0.699 |
| SRR9715743 | Root | 0.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.505 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.006 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.122 |
| SRR8400027 | Control-Root | 1.207 |