Gene detail information of Glyur003483s00042652.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT2G38400.2 | 1.00E-18 | alanine:glyoxylate aminotransferase 3 |
NR | XP_003548722.1 | 2.26E-35 | PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial-like [Glycine max] |
COG | YP_005446575.1 | 3.00E-17 | aminotransferase [Phycisphaera mikurensis NBRC 102666] |
Swissprot | tr|Q94AL9|AGT22_ARATH | 9.00E-34 | Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial (Precursor) |
trEMBL | tr|K7MGE8|K7MGE8_SOYBN | 9.00E-36 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G17820.1} (Fragment) |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold03483 | 3 | 6802 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
-- | -- | -- | -- | -- |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 4.246 |
SRR1783600 | control | 3.990 |
SRR1783602 | moderate drought stress | 2.970 |
SRR1811619 | moderate drought stress | 2.415 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 4.735 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 4.808 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 3.542 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 3.648 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 3.882 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 3.591 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.465 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.668 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 6.010 |
SRR2868004 | Drought Stress(Tissue:root) | 7.271 |
SRR2967015 | Control (Tissue:root) | 7.063 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 0.169 |
SRR9715740 | Leave | 0.051 |
SRR9715741 | Leave | 0.096 |
SRR9715739 | Root | 0.000 |
SRR9715742 | Root | 0.027 |
SRR9715743 | Root | 0.329 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 6.047 |
SRR8749028 | MeJA induced 9h | 9.535 |
SRR8749029 | MeJA induced 9h | 3.116 |
SRR8749030 | Uninduced | 5.734 |
SRR8749031 | Uninduced | 1.541 |
SRR8749032 | Uninduced | 3.076 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 0.524 |
SRR8400027 | Control-Root | 1.173 |