Gene detail information of Glyur003498s00040987.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G02910.1 | 6.00E-158 | Protein of unknown function (DUF616) |
| NR | XP_004511211.1 | 0 | PREDICTED: uncharacterized protein LOC101512141 isoform X1 [Cicer arietinum] |
| COG | YP_721969.1 | 2.00E-06 | glycosyl transferase family protein [Trichodesmium erythraeum IMS101] |
| trEMBL | tr|G7LAX7|G7LAX7_MEDTR | 0 | Transmembrane protein {ECO:0000313|EMBL:AET02842.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03498 | 8637 | 13403 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003498s00040987.1 | PF04765.8 | DUF616 | 156 | 475 | 4.70E-139 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.938 |
| SRR1783600 | control | 7.107 |
| SRR1783602 | moderate drought stress | 4.758 |
| SRR1811619 | moderate drought stress | 4.769 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.273 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.165 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.507 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.571 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.061 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.887 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.187 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 10.462 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.915 |
| SRR2967015 | Control (Tissue:root) | 6.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.849 |
| SRR9715740 | Leave | 0.909 |
| SRR9715741 | Leave | 0.982 |
| SRR9715739 | Root | 0.749 |
| SRR9715742 | Root | 4.166 |
| SRR9715743 | Root | 4.147 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.616 |
| SRR8749028 | MeJA induced 9h | 4.325 |
| SRR8749029 | MeJA induced 9h | 1.233 |
| SRR8749030 | Uninduced | 1.878 |
| SRR8749031 | Uninduced | 0.376 |
| SRR8749032 | Uninduced | 0.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.027 |
| SRR8400027 | Control-Root | 12.428 |