Gene detail information of Glyur003501s00042867.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G19970.1 | 5.00E-87 | |
| NR | XP_004488335.1 | 0 | PREDICTED: uncharacterized protein LOC101501738 [Cicer arietinum] |
| trEMBL | tr|A0A072VIK4|A0A072VIK4_MEDTR | 0 | F-box protein {ECO:0000313|EMBL:KEH37975.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03501 | 7862 | 9061 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.216 |
| SRR1783600 | control | 2.390 |
| SRR1783602 | moderate drought stress | 3.759 |
| SRR1811619 | moderate drought stress | 3.733 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.290 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.140 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.633 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.497 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.938 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.877 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 23.340 |
| SRR2868004 | Drought Stress(Tissue:root) | 25.448 |
| SRR2967015 | Control (Tissue:root) | 14.609 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.214 |
| SRR9715740 | Leave | 0.886 |
| SRR9715741 | Leave | 1.309 |
| SRR9715739 | Root | 8.543 |
| SRR9715742 | Root | 4.278 |
| SRR9715743 | Root | 7.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.320 |
| SRR8749028 | MeJA induced 9h | 8.278 |
| SRR8749029 | MeJA induced 9h | 2.607 |
| SRR8749030 | Uninduced | 1.103 |
| SRR8749031 | Uninduced | 0.047 |
| SRR8749032 | Uninduced | 0.283 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.576 |
| SRR8400027 | Control-Root | 6.771 |