Gene detail information of Glyur003505s00041993.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G31500.3 | 1.00E-08 | DNAse I-like superfamily protein |
| NR | XP_006587654.1 | 1.37E-15 | PREDICTED: carbon catabolite repressor protein 4 homolog 4-like isoform X3 [Glycine max] |
| Swissprot | tr|A8MS41|CCR4D_ARATH | 9.00E-10 | Carbon catabolite repressor protein 4 homolog 4 |
| trEMBL | tr|I1L599|I1L599_SOYBN | 5.00E-16 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G35040.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03505 | 6376 | 7676 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K12603 | CNOT6, CCR4 | EC:3.1.13.4 | RNA degradation | map03018 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.848 |
| SRR1783600 | control | 0.669 |
| SRR1783602 | moderate drought stress | 1.278 |
| SRR1811619 | moderate drought stress | 1.711 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.926 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.236 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.561 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.383 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.180 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.099 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.186 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.112 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.555 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.520 |
| SRR2967015 | Control (Tissue:root) | 1.250 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.539 |
| SRR9715740 | Leave | 0.075 |
| SRR9715741 | Leave | 0.792 |
| SRR9715739 | Root | 1.457 |
| SRR9715742 | Root | 2.317 |
| SRR9715743 | Root | 1.431 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.044 |
| SRR8749028 | MeJA induced 9h | 0.051 |
| SRR8749029 | MeJA induced 9h | 0.118 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.924 |
| SRR8400027 | Control-Root | 4.038 |