Gene detail

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Gene detail information of Glyur003510s00042077.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G38280.1	3.00E-70	PR5-like receptor kinase
NR	XP_003589626.1	0	Kinase-like protein [Medicago truncatula]
COG	YP_001958461.1	3.00E-23	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9FID6\|Y5392_ARATH	2.00E-85	Probable receptor-like protein kinase At5g39020 (Precursor)
trEMBL	tr\|G7I957\|G7I957_MEDTR	0	Receptor-like kinase {ECO:0000313\|EMBL:AES59877.1}

Sequence

Transcript Sequence

>Glyur003510s00042077.1
ATGTTATCCATTGCTGCATTACGGTTACGCATAACCCTCGTGGTTGCGGTTGTGGTTGTGGTTGTGGTGTTAATACTAACTACTATTATCCTGTACAAGGAAAGGCATAGTATCTGGCATAGCCCAGATACTGCTCCAACGGAATGTTCTAGATGGTGCGGGGTCCACAACGTAAGCCACCCTTTCCGGCTGAGAGACAGTCCACACAAGTGCGGTGACAAGAGGTACACCCTATCCTGCGAGGAGGACAACCAACAACAACAATTGGTGCTGTATTTGGGAGATAATGGGAAATACTACGTACAGTCAATTAATTACAACAACTTCACAATACGACTCGTGGATGCCAATCTTTCACTCCTCCTTCAGTATTCCTCTAATTATTCCCTCCCTCCTTATTCCTTAGGCATCTACAATTTGAGTGTCGGATATTATGATGACCCGTACGAAATGTATCAGTACTCCGGGGGCAGGGGGAATATGTTGGTGAAGTCTATGGTATTGGTGAGGTGTCCGAATCGGGTGGATTCCTCTGACATCGACGGTGGCAGAGGCGACAACATGTCGTGCACAAATATCCGCCGTATGCTGTTTTATGGGTTCGAACTTTCTTGGCGGAATGGTCTTTGTAAACATGGTGGGTATGCCTATGAGATCGATAGCAATCACCAGCCTCATTGTTTCCCTGGAGGAGGCCAGGTGGTTATTTGGCTCTGTGGTGTCAAATTTGTTCTTGGAGCGCCATGTGTCATTGTCTTATTAATCTATAAGTGGAGACGCAGACATTTATCCATGTACGAAGGCATCGAAGATTTCCTACGCAGTGACAACAATATCATTCCTATCAGGTACTCTTACAGAGACATCAAGAAGATAACAGAACAATTCAAGACAAAACTTGGGAACGGAGGCTATGGCTCTGTCTTCAAAGGAAAACTTCGAAGTGGCCGTCTCGTAGTGGTCAAGGTACTGTTGGACAAAGCCAAATCCAACGGTCAAGATTTCATCAATGAAGTCACCACCATCGGTAGGATTCACCATGTCAATGTGGTGCAGCTCATTGGCTTTTGTGTTGAGGGATCAAAACGTGCTCTTATATATGAGTTCATGCCAAATGGGTCTCTCGAAAAACACATCTTTTCTTCTCATCATGAAGAGGGTCATACTCGTCCTAATTCCTTGAGTTGCGAAAAATTGTACGCAATTTCTCTTGGAGTGGCTCGAGGCATTGAGTATTTACATAATGGTTGCAACATGAAAATCTTGCACTTTGACATAAAGCCTCATAACATCCTTCTTGATGAGAATTTCAATCCGAAGGTTTCTGATTTTGGACTAGCAAGGCTCTGTCCTACTGATAACAGCATCGTGTCATTGACAGCAGCAAGAGGAACCATAGGCTACATGGCTCCTGAGTTGTTCTATAGAAATGTTGGTACAGTCTCATACAAGGCTGATGTGTATAGNTTTGGGATGTTATTGATGGAGATGGCCAGTAAAAGGAAGAACTTGAATGCATTGGCTGAGCAATCTAGTCAGATTTATTTCCCTTTTTGGGTTTATGATCGGTTGCGTGATGGAAAGGAAACAAGGCCCAGCGATCGTCCTCCGATGCATAGAGTGTTGGAGATGCTGGAAGAAGAAGATGAGGAATTACAATTGCCTAATAAGCCTTACCTATTCCCAGAAGATCTACCCGCAGAGGATGTTAGAGATGATGATGGTACTATTAGCAGCTCATGGCCTTCCTCTGCTACTTCAATACGTGATTCCAAGGAATNAACCTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold03510	18396	23445	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.9.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups GO:0030247 polysaccharide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003510s00042077.1	PF13947.1	GUB_WAK_bind	47	116	4.20E-08
Glyur003510s00042077.1	PF00069.20	Pkinase	296	507	2.40E-42

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.293
SRR1783600	control	0.238
SRR1783602	moderate drought stress	0.021
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.177
DRR006520	Root Summer glycyrrhizin high producing strain	0.179
DRR006521	Root Winter glycyrrhizin high producing strain	0.029
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	5.161
DRR006524	Root Summer glycyrrhizin low producing strain	4.503
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.647
DRR006526	Leaf Summer glycyrrhizin high producing strain	37.262

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.070
SRR2868004	Drought Stress(Tissue:root)	1.889
SRR2967015	Control (Tissue:root)	0.171

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	24.424
SRR9715740	Leave	1.942
SRR9715741	Leave	97.930
SRR9715739	Root	0.158
SRR9715742	Root	0.354
SRR9715743	Root	0.325

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.177
SRR8749028	MeJA induced 9h	0.239
SRR8749029	MeJA induced 9h	0.267
SRR8749030	Uninduced	0.114
SRR8749031	Uninduced	0.486
SRR8749032	Uninduced	0.455

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.552
SRR8400027	Control-Root	0.918