Gene detail information of Glyur003531s00039533.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G25000.1 | 2.00E-84 | alpha-amylase-like |
| NR | XP_004499060.1 | 2.17E-140 | PREDICTED: alpha-amylase-like [Cicer arietinum] |
| COG | YP_003951996.1 | 7.00E-59 | alpha-amylase [Stigmatella aurantiaca DW4/3-1] |
| Swissprot | tr|P17859|AMYA_VIGMU | 1.00E-118 | Alpha-amylase (Precursor) |
| trEMBL | tr|G7I3K7|G7I3K7_MEDTR | 4.00E-120 | Alpha amylase domain protein {ECO:0000313|EMBL:AES59442.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold03531 | 1597 | 3092 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM45,CBM45,GH13 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01176 | AMY, amyA, malS | EC:3.2.1.1 | Starch and sucrose metabolism | map00500 |
| Carbohydrate digestion and absorption | map04973 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur003531s00039533.1 | PF07821.7 | Alpha-amyl_C2 | 202 | 262 | 7.60E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.184 |
| SRR1783600 | control | 0.139 |
| SRR1783602 | moderate drought stress | 0.022 |
| SRR1811619 | moderate drought stress | 0.047 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.814 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.689 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.310 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.361 |
| SRR2967015 | Control (Tissue:root) | 0.547 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.405 |
| SRR9715740 | Leave | 0.101 |
| SRR9715741 | Leave | 1.100 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.175 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.004 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.153 |
| SRR8400027 | Control-Root | 0.501 |