Gene detail

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Gene detail information of Glyur003565s00043133.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G27290.1	4.00E-71	S-locus lectin protein kinase family protein
NR	KHN00053.1	3.46E-130	G-type lectin S-receptor-like serine/threonine-protein kinase [Glycine soja]
COG	YP_284821.1	5.00E-15	protein kinase:GAF [Dechloromonas aromatica RCB]
Swissprot	tr\|O81832\|Y4729_ARATH	2.00E-80	G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 (Precursor)
trEMBL	tr\|F6H291\|F6H291_VITVI	1.00E-131	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB46411.1}

Sequence

Transcript Sequence

>Glyur003565s00043133.1
AAAATAAACAGAAATTCAGACCACGACAATGGAGAAGACCATCCCGACTTAGCAACTTCGCAGTATTAGTGGAATCTGCTTGGACTGCAATGGCAGACTTACTATTCAAAGTCTCCTCAAGCAAATCATGAACATATTGTCTACCTACAGAGAATTCCTACGTATTGGGCAATCGGTGGGAATCTCAGACACTATTGTTTCTTACGGCGGGAACTTCGAACTGGGATTTTTCTCCAGAATCAGAGAGAACTCCACCAAGTACTACGTGGGTATANGGTTTAAATTTAAAAAGGTTCCATTCCAAACGACAAGATTGTGTGGGTTGCCAACAGGAATTACTCATTTCAAACTTCCTCAGCAGTTCTTACCATTCAGCCNGACGGCAACCTCGCCATTATAGATGGACCAGTGACTTTCCACGTAAGTACTGTTGCATACAACTATAGTACCTATGTGNCACTCTTGGACTCAGGAAACTTGGTACTAGTCAACAACTCGAACCAAGCGGTTTTGTGGCAGAGTTTTGATTACCCTACGGATACCCTTCTGCCNGGAATGAACTTAGGAACCGGTTGGTTACTGAGATCATGGACAAGCGCAGACGACCCTGCTCAAGGAGCGTTTTCTCTCGATTATGATATTGGCTCGGNGAGTCTAATTGTCAAAAAGGGTTCTAATGTGTTCTGGATTGATGGGCGTTCCAATGTTTCAAGGGAGGGCGATGTTGACCGAAATCGAATGGGTTTGAGGGTAATGTTCGGGATTGATGCCACAAGTTTATTCACCCTGCCAGCTGGTAGCAACTNTCGGTTGGTACTGCTAGTGTCAGGGGATCTTGACTACCAGGATTGGTCAGAGGAAGCCAATCGTTGGGTTTCTGTACAGTCATCAAAGTGTGGAACCAACAATTCTTGTGGAGCTTTTTCCATCTGCAATCCACAAGATCTTGACGCTTGTCAATGTTTGAAAGGTTTTGAACCGTTTGATGCAGATTCTGGGAACAGATCTGATGGATGTGTCAGGAGAAAGGACTTGTCCTGCACCAACACAAGCAGTGACGACAACAGTAACAGTAACAGTAGCGACCGATTCATGCAGTTCATTAAAGTGGAATTACCTTCAATCCAAGTTAAGCGGAGGATGGATACAGCAAAAAGATGTGAAAGCACTTGCATAAGCAATTGTACCTGTGTTGCTTATGCTTATGATTTCAACGGTAACTGCATGTTGTGGCATGATCAAGTATTGAGTCTGAAGAACATCTCAACTGATATTGCAAGTGCTAATAATAATAATAATAATAATCCAAGTTTCTTTCTTAGACTTGCTGCCTCAGAATTGATTACCACCGGTTCTAATATAACGAATGCATTTGGGAGACACGAAAACAGGATGAGGAATCTACTTCTAACTGTTATATTGACCTCATTTTCAATATTGCTCATAATGCTCGGCCTACTTGTTTACTGGAATAGAAGGCAAGGAAAGAAAGATGCAACNAAAACAAGGATGCTAGATTGGGAAACACGAGTTCAGATAATTGATGGAATTGCCCAAGGACTTCTTTATCTTCATCAATATTCCAGGTTCCGGATCATTCACCGAGATTTAAAAGCTAGCAACATATTGTTAGACATCAATATGAATCCNAAAATATCAGATTTTGGAATGGCGAGAATATTTGGTGAGAATGAACTTCAAGCGAACACAAATCGGATAGTTGGAACTTATGGCTACATGTCCCCTGAATATGCTGTGGAAGGTCTTTTCTCAGTTAAATCTGATGTGTTTAGCTTTGGGGTTCTTTTGTTAGAGATTGTAAGTGGAANGAAGAATACTGGTTTTTATCAAACGAAATCCTTCAATCTTCTTGGATATGCTTGGGATCTATGGACAAGCAATTCGGTAATGGACTTGATGGACCCAACATTGGAACATGTCTCCAGCAAGCATGTAGTGCCAAAATATGTAAATATAGGACTTCTGTGTGTTCAAGAAAGTCCAGCAGATAGGCCAACCATGTCTGATGTTGTATCAATGATTGGCAATGACACTGCGANCCTTCCCTGTCCAAAGCCACCTGCATTTCTAAATGTGAGGAGCAATGAAAATTCAANATTGGCCAAAAGCATGGAAGAAAACTTTTCTGTGAATGTTATCACAGATTCACTTGTGGAGGCAAGATAATCAGTTCGCNACTTCTCTCATTGTAAGATTTGATGGTTACTTGTAGTTGTTTAGTAAACAGAGAAACATTTGTTCTAAGAATGT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold03565	9048	12679	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.7.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0048544 recognition of pollen

molecular_function GO:0004672 protein kinase activity GO:0004674 protein serine/threonine kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur003565s00043133.1	PF00954.15	S_locus_glycop	83	142	4.90E-11
Glyur003565s00043133.1	PF08276.6	PAN_2	175	231	1.60E-11
Glyur003565s00043133.1	PF07714.12	Pkinase_Tyr	316	495	8.20E-29
Glyur003565s00043133.1	PF11883.3	DUF3403	498	543	2.90E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.031
SRR1783600	control	0.031
SRR1783602	moderate drought stress	0.186
SRR1811619	moderate drought stress	0.161

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.362
DRR006520	Root Summer glycyrrhizin high producing strain	0.358
DRR006521	Root Winter glycyrrhizin high producing strain	0.046
DRR006522	Root Winter glycyrrhizin high producing strain	0.045
DRR006523	Root Summer glycyrrhizin low producing strain	0.269
DRR006524	Root Summer glycyrrhizin low producing strain	0.275
DRR006525	Leaf Summer glycyrrhizin high producing strain	38.173
DRR006526	Leaf Summer glycyrrhizin high producing strain	37.704

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.060
SRR2868004	Drought Stress(Tissue:root)	1.278
SRR2967015	Control (Tissue:root)	0.861

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	26.470
SRR9715740	Leave	25.414
SRR9715741	Leave	44.176
SRR9715739	Root	0.052
SRR9715742	Root	0.342
SRR9715743	Root	0.389

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.138
SRR8749028	MeJA induced 9h	1.267
SRR8749029	MeJA induced 9h	0.311
SRR8749030	Uninduced	0.571
SRR8749031	Uninduced	0.117
SRR8749032	Uninduced	0.059

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.457
SRR8400027	Control-Root	0.510