Gene detail information of Glyur003567s00041497.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G06460.10ubiquitin activating enzyme 2
NRXP_004490630.10PREDICTED: ubiquitin-activating enzyme E1 1-like isoform X1 [Cicer arietinum]
COGYP_008797957.16.00E-24ubiquitin-activating enzyme E1-like protein [Candidatus Caldiarchaeum subterraneum]
Swissprottr|P92974|UBE12_ARATH0Ubiquitin-activating enzyme E1 2
trEMBLtr|K7KA83|K7KA83_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G39495.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold035671450022221-


Gene family

Gene familysubfamily
Ubiquitin FamilyThiF


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03178UBE1, UBA1 EC:6.2.1.45 Ubiquitin mediated proteolysis map04120
Parkinson's diseasemap05012


Gene Ontology

biological_process

GO:0006464  cellular protein modification process


molecular_function

GO:0005524  ATP binding

GO:0008641  small protein activating enzyme activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur003567s00041497.1PF00899.16ThiF1412547.50E-17
Glyur003567s00041497.1PF00899.16ThiF5376791.40E-35
Glyur003567s00041497.1PF10585.4UBA_e1_thiolCys6827254.70E-18
Glyur003567s00041497.1PF02134.16UBACT8248831.30E-06
Glyur003567s00041497.1PF02134.16UBACT9249904.80E-22
Glyur003567s00041497.1PF09358.5UBA_e1_C99811203.30E-37


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control62.583
SRR1783600control63.088
SRR1783602moderate drought stress59.900
SRR1811619moderate drought stress59.646

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain74.699
DRR006520Root Summer glycyrrhizin high producing strain73.588
DRR006521Root Winter glycyrrhizin high producing strain67.832
DRR006522Root Winter glycyrrhizin high producing strain65.726
DRR006523Root Summer glycyrrhizin low producing strain69.397
DRR006524Root Summer glycyrrhizin low producing strain69.515
DRR006525Leaf Summer glycyrrhizin high producing strain34.958
DRR006526Leaf Summer glycyrrhizin high producing strain34.830

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)82.937
SRR2868004Drought Stress(Tissue:root)83.840
SRR2967015Control (Tissue:root)79.677

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave41.019
SRR9715740Leave48.202
SRR9715741Leave48.614
SRR9715739Root23.393
SRR9715742Root73.177
SRR9715743Root66.028

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h73.294
SRR8749028MeJA induced 9h68.151
SRR8749029MeJA induced 9h56.148
SRR8749030Uninduced34.034
SRR8749031Uninduced36.085
SRR8749032Uninduced34.338

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root70.213
SRR8400027Control-Root60.040

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved